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Started by upstream project "BIOFORMATS-test-repo" build number 279 originally caused by: Started by upstream project "Trigger" build number 299 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14507801097131165821.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43985_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:42:31,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:42:31,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:42:31,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:42:31,801 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:42:31,802 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:42:31,802 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:42:31,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:42:31,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:42:31,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:42:31,804 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:42:31,804 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:42:31,804 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:42:31,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:42:31,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:42:32,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:42:32,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:42:32,016 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:42:32,016 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:42:32,016 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:42:32,017 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:42:32,017 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:42:32,018 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:42:32,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 215 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-04 00:42:32,033] [main] java.version = 17.0.2 [testng] 00:42:32,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:42:32,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:32,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-04_00-42-32.log] [testng] 00:42:32,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-04 00:42:32,086] [main] testng.directory = /data [testng] [2024-12-04 00:42:32,087] [main] testng.configDirectory = /config [testng] [2024-12-04 00:42:32,095] [main] testng.multiplier = 1.0 [testng] [2024-12-04 00:42:32,096] [main] testng.in-memory = false [testng] [2024-12-04 00:42:32,096] [main] testng.allow-missing = false [testng] [2024-12-04 00:42:32,096] [main] user.language = en [testng] [2024-12-04 00:42:32,096] [main] user.country = ${user.country} [testng] [2024-12-04 00:42:32,096] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-04 00:42:48,103] [main] ---------------------------------------- [testng] [2024-12-04 00:42:48,103] [main] Total files: 259 [testng] [2024-12-04 00:42:48,103] [main] Scan time: 16.007 s (61 ms/file) [testng] [2024-12-04 00:42:48,103] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-04 00:48:10,126] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 00:48:10,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:48:10,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:10,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-04_00-48-10.log] [testng] 00:48:10,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@346570f0 - End of configuration. [testng] [2024-12-04 00:48:24,861] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] 00:48:24,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:48:24,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:24,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-04_00-48-24.log] [testng] 00:48:24,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8364c3c - End of configuration. [testng] [2024-12-04 00:48:25,223] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] 00:48:25,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:48:25,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:25,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-04_00-48-25.log] [testng] 00:48:25,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7914afa9 - End of configuration. [testng] [2024-12-04 00:48:25,486] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] 00:48:25,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:48:25,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:25,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-04_00-48-25.log] [testng] 00:48:25,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37b8548b - End of configuration. [testng] [2024-12-04 00:48:25,987] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] 00:48:25,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:48:25,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:25,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-04_00-48-25.log] [testng] 00:48:25,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@524de17f - End of configuration. [testng] [2024-12-04 00:48:26,179] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] 00:48:26,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:48:26,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:26,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-04_00-48-26.log] [testng] 00:48:26,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79714da3 - End of configuration. [testng] [2024-12-04 00:48:26,518] [pool-1-thread-7] Initializing /data/brian/PA-GFP-3.oib: [testng] 00:48:26,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:48:26,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:26,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-04_00-48-26.log] [testng] 00:48:26,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6057f525 - End of configuration. [testng] [2024-12-04 00:48:26,980] [pool-1-thread-6] Initializing /data/stefan/cytosol_03e.oib: [testng] 00:48:26,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:48:26,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:26,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-04_00-48-26.log] [testng] 00:48:26,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44042792 - End of configuration. [testng] [2024-12-04 00:48:27,693] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 00:48:27,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:48:27,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:27,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-04_00-48-27.log] [testng] 00:48:27,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47b92663 - End of configuration. [testng] [2024-12-04 00:48:28,143] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] 00:48:28,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:48:28,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:28,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-04_00-48-28.log] [testng] 00:48:28,144 |-INFO in ch.qos.logback.core.sift.SiftProcessor@196ae177 - End of configuration. [testng] [2024-12-04 00:48:28,417] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] 00:48:28,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:48:28,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:28,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-04_00-48-28.log] [testng] 00:48:28,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58fdbaaf - End of configuration. [testng] [2024-12-04 00:48:29,893] [pool-1-thread-2] Initializing /data/glen/Null file/test no change.oif: [testng] 00:48:29,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:48:29,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:29,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-04_00-48-29.log] [testng] 00:48:29,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44859c38 - End of configuration. [testng] [2024-12-04 00:48:33,382] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-12-04 00:48:33,878] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-12-04 00:48:34,254] [pool-1-thread-12] Initializing /data/marc/V0606L.oib: [testng] [2024-12-04 00:48:35,787] [pool-1-thread-4] Initializing /data/molly/11OCT7.OIF: [testng] [2024-12-04 00:48:40,982] [pool-1-thread-7] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-12-04 00:48:45,220] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-12-04 00:48:45,838] [pool-1-thread-11] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-12-04 00:48:46,769] [pool-1-thread-9] Initializing /data/glen/simulstack.oib: [testng] [2024-12-04 00:48:49,978] [pool-1-thread-11] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-12-04 00:48:51,528] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-12-04 00:48:52,093] [pool-1-thread-2] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-12-04 00:48:52,419] [pool-1-thread-6] Initializing /data/marc/V0606J.oib: [testng] [2024-12-04 00:48:55,447] [pool-1-thread-7] Initializing /data/glen/simulstack.oif: [testng] [2024-12-04 00:48:57,574] [pool-1-thread-2] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-12-04 00:48:58,815] [pool-1-thread-12] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-12-04 00:48:59,166] [pool-1-thread-9] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-12-04 00:49:02,274] [pool-1-thread-12] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-12-04 00:49:06,879] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-12-04 00:49:11,291] [pool-1-thread-8] Initializing /data/glen/singlesimul.oib: [testng] [2024-12-04 00:49:11,851] [pool-1-thread-6] Initializing /data/glen/seqlinestack.oib: [testng] [2024-12-04 00:49:14,010] [pool-1-thread-8] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-12-04 00:49:16,119] [pool-1-thread-6] Initializing /data/allan/62909#1.oib: [testng] [2024-12-04 00:49:16,805] [pool-1-thread-8] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-12-04 00:49:18,636] [pool-1-thread-6] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-12-04 00:49:19,025] [pool-1-thread-2] Initializing /data/tom/zseries-test.oib: [testng] [2024-12-04 00:49:20,932] [pool-1-thread-8] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-12-04 00:49:22,816] [pool-1-thread-6] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-12-04 00:49:28,108] [pool-1-thread-8] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-12-04 00:49:28,513] [pool-1-thread-2] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-12-04 00:49:31,834] [pool-1-thread-8] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-12-04 00:49:32,434] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-12-04 00:49:33,909] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-12-04 00:49:35,531] [pool-1-thread-2] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-12-04 00:49:36,710] [pool-1-thread-8] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-12-04 00:49:37,591] [pool-1-thread-12] Initializing /data/molly/11OCT10.OIF: [testng] [2024-12-04 00:49:46,869] [pool-1-thread-5] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-12-04 00:49:47,287] [pool-1-thread-8] Initializing /data/molly/11OCT6.OIF: [testng] [2024-12-04 00:49:59,823] [pool-1-thread-2] Initializing /data/glen/singleseqframe.oif: [testng] [2024-12-04 00:50:00,575] [pool-1-thread-5] Initializing /data/molly/11OCT4.OIF: [testng] [2024-12-04 00:50:10,358] [pool-1-thread-10] Initializing /data/molly/11OCT8.OIF: [testng] [2024-12-04 00:50:27,601] [pool-1-thread-2] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-12-04 00:50:30,759] [pool-1-thread-2] Initializing /data/david/Image0016.oib: [testng] [2024-12-04 00:50:33,311] [pool-1-thread-2] Initializing /data/glen/singleseqline.oif: [testng] [2024-12-04 00:50:58,523] [pool-1-thread-2] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-12-04 00:51:01,060] [pool-1-thread-2] Initializing /data/aryeh/control_test.oib: [testng] [2024-12-04 00:51:26,253] [pool-1-thread-2] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-12-04 00:51:31,285] [pool-1-thread-2] Initializing /data/jae/Image0001.oib: [testng] [2024-12-04 00:51:35,888] [pool-1-thread-2] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-12-04 00:51:42,196] [pool-1-thread-2] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-12-04 00:52:06,425] [pool-1-thread-2] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-12-04 00:52:09,886] [pool-1-thread-2] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-12-04 00:52:11,134] [pool-1-thread-2] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-12-04 00:52:15,121] [pool-1-thread-2] Initializing /data/johannes/step5b.bmp: [testng] [2024-12-04 00:52:17,262] [pool-1-thread-2] Initializing /data/molly/11OCT9.OIF: [testng] [2024-12-04 00:53:48,664] [pool-1-thread-11] Initializing /data/johannes/step4.bmp: [testng] [2024-12-04 00:53:51,198] [pool-1-thread-11] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-12-04 00:53:56,664] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-12-04 00:54:04,047] [pool-1-thread-11] Initializing /data/tom/RGB-1.avi: [testng] [2024-12-04 00:54:08,358] [pool-1-thread-11] Initializing /data/yoshihito/XY.oif: [testng] [2024-12-04 00:54:35,522] [pool-1-thread-11] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-12-04 00:54:40,899] [pool-1-thread-11] Initializing /data/glen/4205basal106072.oif: [testng] [2024-12-04 00:59:19,933] [pool-1-thread-7] Initializing /data/sten/01.oib: [testng] [2024-12-04 00:59:23,591] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-12-04 00:59:26,601] [pool-1-thread-7] Initializing /data/molly/11OCT3.OIF: [testng] [2024-12-04 01:00:18,114] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-12-04 01:00:21,982] [pool-1-thread-9] Initializing /data/glen/singlesimul.oif: [testng] [2024-12-04 01:00:56,057] [pool-1-thread-9] Initializing /data/simon/used_to_work.oib: [testng] [2024-12-04 01:01:00,974] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-12-04 01:01:04,447] [pool-1-thread-9] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-12-04 01:01:08,713] [pool-1-thread-9] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-12-04 01:01:12,376] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-12-04 01:01:19,650] [pool-1-thread-9] Initializing /data/glen/111407.oif: [testng] [2024-12-04 01:01:43,794] [pool-1-thread-4] Initializing /data/chris/missegragation-15.oib: [testng] [2024-12-04 01:01:46,574] [pool-1-thread-4] Initializing /data/glen/singleseqframe.oib: [testng] [2024-12-04 01:01:49,312] [pool-1-thread-4] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-12-04 01:04:43,082] [pool-1-thread-5] Initializing /data/monica/Image0056.oif: [testng] [2024-12-04 01:05:40,819] [pool-1-thread-5] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-12-04 01:05:46,369] [pool-1-thread-5] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-12-04 01:05:52,085] [pool-1-thread-5] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-12-04 01:05:57,556] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-12-04 01:06:03,496] [pool-1-thread-5] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-12-04 01:06:44,381] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-12-04 01:07:01,679] [pool-1-thread-10] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-12-04 01:07:22,172] [pool-1-thread-8] Initializing /data/christian/20min.oif: [testng] [2024-12-04 01:07:29,381] [pool-1-thread-10] Initializing /data/glen/Null file/test change.oif: [testng] [2024-12-04 01:07:38,335] [pool-1-thread-8] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-12-04 01:07:43,038] [pool-1-thread-8] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-12-04 01:07:46,494] [pool-1-thread-6] Initializing /data/glen/notsaturated.oib: [testng] [2024-12-04 01:07:51,695] [pool-1-thread-6] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-12-04 01:07:55,560] [pool-1-thread-10] Initializing /data/brian/Kaede15.oib: [testng] [2024-12-04 01:08:00,676] [pool-1-thread-10] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-12-04 01:08:14,566] [pool-1-thread-6] Initializing /data/glen/Image0002.oif: [testng] [2024-12-04 01:08:45,122] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-12-04 01:08:46,220] [pool-1-thread-5] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-12-04 01:08:50,258] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-12-04 01:08:55,939] [pool-1-thread-5] Initializing /data/brian/lambda02nm.oib: [testng] [2024-12-04 01:09:00,390] [pool-1-thread-5] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-12-04 01:09:04,982] [pool-1-thread-5] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-12-04 01:09:08,963] [pool-1-thread-5] Initializing /data/michael/CELL3.oib: [testng] [2024-12-04 01:09:12,228] [pool-1-thread-5] Initializing /data/brian/FLIP.oib: [testng] [2024-12-04 01:09:17,813] [pool-1-thread-5] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-12-04 01:09:25,168] [pool-1-thread-5] Initializing /data/johannes/step1.bmp: [testng] [2024-12-04 01:09:25,535] [pool-1-thread-8] Initializing /data/molly/11OCT5.OIF: [testng] [2024-12-04 01:09:35,495] [pool-1-thread-5] Initializing /data/glen/singleseqline.oib: [testng] [2024-12-04 01:09:38,821] [pool-1-thread-5] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-12-04 01:09:50,696] [pool-1-thread-10] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-12-04 01:09:51,333] [pool-1-thread-4] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-12-04 01:09:54,589] [pool-1-thread-4] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-12-04 01:09:55,822] [pool-1-thread-10] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-12-04 01:10:02,800] [pool-1-thread-4] Initializing /data/johannes/step4b.bmp: [testng] [2024-12-04 01:10:04,874] [pool-1-thread-4] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-12-04 01:10:39,584] [pool-1-thread-12] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-12-04 01:10:44,582] [pool-1-thread-4] Initializing /data/molly/11OCT11.OIF: [testng] [2024-12-04 01:10:56,109] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-12-04 01:11:01,260] [pool-1-thread-12] Initializing /data/karl/Image0009.oib: [testng] [2024-12-04 01:11:04,102] [pool-1-thread-12] Initializing /data/molly/11OCT2.OIF: [testng] [2024-12-04 01:11:59,079] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-12-04 01:12:05,011] [pool-1-thread-9] Initializing /data/johannes/step3.bmp: [testng] [2024-12-04 01:12:07,274] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-12-04 01:12:14,046] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-12-04 01:12:20,743] [pool-1-thread-9] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-12-04 01:12:25,291] [pool-1-thread-9] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-12-04 01:14:26,074] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-12-04 01:14:36,874] [pool-1-thread-11] Initializing /data/glen/notsaturated.oif: [testng] [2024-12-04 01:14:41,231] [pool-1-thread-3] Initializing /data/kay/IM2pg.oib: [testng] [2024-12-04 01:14:48,728] [pool-1-thread-3] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-12-04 01:15:36,381] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-12-04 01:15:45,109] [pool-1-thread-3] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-12-04 01:24:22,994] [pool-1-thread-11] Initializing /data/pedro/plv-test.oib: [testng] [2024-12-04 01:24:28,411] [pool-1-thread-11] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-12-04 01:24:35,562] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-12-04 01:24:42,262] [pool-1-thread-11] Initializing /data/johannes/step2.bmp: [testng] 02:34:36,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:34:36,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:36,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-04_02-34-36.log] [testng] 02:34:36,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f467bb9 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 112 minutes 9 seconds Finished: SUCCESS