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Started by upstream project "BIOFORMATS-test-repo" build number 279 originally caused by: Started by upstream project "Trigger" build number 299 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins13394702690656791631.sh + '[' nd2 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44001_merge_ci -v /uod/idr/repos/curated/nd2:/data -v /uod/idr-scratch/merge-ci/curated/nd2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:47:24,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:47:24,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:47:24,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:47:24,556 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:47:24,556 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:47:24,556 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:47:24,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:47:24,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:47:24,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:47:24,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:47:24,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:47:24,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:47:24,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:47:24,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:47:24,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:47:24,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:47:24,765 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:47:24,765 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:47:24,765 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:47:24,765 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:47:24,765 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:47:24,766 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:47:24,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 209 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-04 00:47:24,776] [main] java.version = 17.0.2 [testng] 00:47:24,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:47:24,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:24,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-04_00-47-24.log] [testng] 00:47:24,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-04 00:47:24,827] [main] testng.directory = /data [testng] [2024-12-04 00:47:24,827] [main] testng.configDirectory = /config [testng] [2024-12-04 00:47:24,836] [main] testng.multiplier = 1.0 [testng] [2024-12-04 00:47:24,837] [main] testng.in-memory = false [testng] [2024-12-04 00:47:24,837] [main] testng.allow-missing = false [testng] [2024-12-04 00:47:24,837] [main] user.language = en [testng] [2024-12-04 00:47:24,837] [main] user.country = ${user.country} [testng] [2024-12-04 00:47:24,837] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-04 00:49:11,382] [main] ---------------------------------------- [testng] [2024-12-04 00:49:11,383] [main] Total files: 275 [testng] [2024-12-04 00:49:11,383] [main] Scan time: 106.545 s (387 ms/file) [testng] [2024-12-04 00:49:11,383] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 247 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-04 00:59:26,050] [pool-1-thread-1] Initializing /data/michael/MCammer Nikon file opens in wrong order.nd2: [testng] 00:59:26,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:59:26,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:26,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-04_00-59-26.log] [testng] 00:59:26,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@485b6e37 - End of configuration. [testng] [2024-12-04 00:59:27,107] [pool-1-thread-12] Initializing /data/michael/metadata only reported for last channel.nd2: [testng] 00:59:27,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:59:27,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:27,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-04_00-59-27.log] [testng] 00:59:27,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ac48bd8 - End of configuration. [testng] [2024-12-04 00:59:27,781] [pool-1-thread-11] Initializing /data/qa-29438/chip1_channel1_each-pixel.nd2: [testng] 00:59:27,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:59:27,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:27,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-04_00-59-27.log] [testng] 00:59:27,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a00f111 - End of configuration. [testng] [2024-12-04 00:59:28,352] [pool-1-thread-10] Initializing /data/venu/eight_160807_control cells_4D.tif: [testng] 00:59:28,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:59:28,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:28,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-04_00-59-28.log] [testng] 00:59:28,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@81a788f - End of configuration. [testng] [2024-12-04 00:59:29,367] [pool-1-thread-9] Initializing /data/michael/Opens ok with LOCI.nd2: [testng] 00:59:29,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:59:29,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:29,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-04_00-59-29.log] [testng] 00:59:29,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c01225 - End of configuration. [testng] [2024-12-04 00:59:29,958] [pool-1-thread-8] Initializing /data/qa-4196/120123 10h timelapse after incubator set up 1xy 1t.nd2: [testng] 00:59:29,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:59:29,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:29,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-04_00-59-29.log] [testng] 00:59:29,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@419066c7 - End of configuration. [testng] [2024-12-04 00:59:30,540] [pool-1-thread-7] Initializing /data/qa-7799/Patient 67 from 20130812.nd2: [testng] 00:59:30,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:59:30,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:30,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-04_00-59-30.log] [testng] 00:59:30,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289ba785 - End of configuration. [testng] [2024-12-04 00:59:31,145] [pool-1-thread-6] Initializing /data/strand/Serie040.nd2: [testng] 00:59:31,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:59:31,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:31,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-04_00-59-31.log] [testng] 00:59:31,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c2a7190 - End of configuration. [testng] [2024-12-04 00:59:31,715] [pool-1-thread-5] Initializing /data/qa-17099/upSIAPdownNT002.nd2: [testng] 00:59:31,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:59:31,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:31,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-04_00-59-31.log] [testng] 00:59:31,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b2489b - End of configuration. [testng] [2024-12-04 00:59:32,430] [pool-1-thread-4] Initializing /data/public/aryeh/multipoint.nd2: [testng] 00:59:32,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:59:32,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:32,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-04_00-59-32.log] [testng] 00:59:32,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1032bd72 - End of configuration. [testng] [2024-12-04 00:59:33,577] [pool-1-thread-3] Initializing /data/gaurav/A1.nd2: [testng] 00:59:33,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:59:33,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:33,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-04_00-59-33.log] [testng] 00:59:33,578 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f1d4686 - End of configuration. [testng] [2024-12-04 00:59:34,372] [pool-1-thread-2] Initializing /data/qa-7906/2591A1.jp2: [testng] 00:59:34,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:59:34,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:34,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-04_00-59-34.log] [testng] 00:59:34,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5714e352 - End of configuration. [testng] [2024-12-04 00:59:40,328] [pool-1-thread-11] Initializing /data/colin/20110729_beads_001.nd2: [testng] [2024-12-04 00:59:41,179] [pool-1-thread-3] Initializing /data/venu/nd-three_channel-6.nd2: [testng] [2024-12-04 00:59:42,009] [pool-1-thread-8] Initializing /data/qa-7983/control_test_200314001.nd2: [testng] [2024-12-04 00:59:42,577] [pool-1-thread-5] Initializing /data/public/aryeh/por003.nd2: [testng] [2024-12-04 00:59:43,051] [pool-1-thread-12] Initializing /data/qa-27812/Deconvolved_32Float.nd2: [testng] [2024-12-04 00:59:43,492] [pool-1-thread-6] Initializing /data/colin/20110729_beads_001_xy1.nd2: [testng] [2024-12-04 00:59:44,069] [pool-1-thread-9] Initializing /data/michael/opens_ok.nd2: [testng] [2024-12-04 00:59:44,954] [pool-1-thread-10] Initializing /data/kevin/100nm_coat_1.nd2: [testng] [2024-12-04 00:59:50,362] [pool-1-thread-12] Initializing /data/brian/MDCK002.nd2: [testng] [2024-12-04 00:59:51,577] [pool-1-thread-3] Initializing /data/marek/NIS4_fails_to_open_correctly.nd2: [testng] [2024-12-04 00:59:52,260] [pool-1-thread-6] Initializing /data/public/jonas/header_test2.nd2: [testng] [2024-12-04 00:59:53,153] [pool-1-thread-8] Initializing /data/david/NDSequence013.nd2: [testng] [2024-12-04 00:59:53,864] [pool-1-thread-11] Initializing /data/stefanie/nd026_xy1.nd2: [testng] [2024-12-04 00:59:54,624] [pool-1-thread-5] Initializing /data/pete/psf_bead_theoretical.nd2: [testng] [2024-12-04 00:59:55,195] [pool-1-thread-1] Initializing /data/jcb/201101064/Fig 8B imp beta-BPM MaxIP.nd2: [testng] [2024-12-04 00:59:58,313] [pool-1-thread-12] Initializing /data/michael/TEMPmcammer.nd2: [testng] [2024-12-04 00:59:59,256] [pool-1-thread-3] Initializing /data/qa-7454/Dapi PFA Eukitt 1r 001.nd2: [testng] [2024-12-04 01:00:00,357] [pool-1-thread-6] Initializing /data/public/aryeh/but3_cont2002.nd2: [testng] [2024-12-04 01:00:00,858] [pool-1-thread-9] Initializing /data/venu/two_160807_control cells_4D.tif: [testng] [2024-12-04 01:00:01,717] [pool-1-thread-10] Initializing /data/sara/Ex9 ALADIN WT KO KI 31_07_2013.nd2: [testng] [2024-12-04 01:00:02,955] [pool-1-thread-5] Initializing /data/public/jonas/qa-7534/130606_JCC719_003.nd2: [testng] [2024-12-04 01:00:04,907] [pool-1-thread-2] Initializing /data/colin/20110729_beads_001_xy2.nd2: [testng] [2024-12-04 01:00:07,428] [pool-1-thread-11] Initializing /data/jason/CapturedBF2.nd2: [testng] [2024-12-04 01:00:08,115] [pool-1-thread-8] Initializing /data/stephen/LOCI_screen_dump.jpg: [testng] [2024-12-04 01:00:08,708] [pool-1-thread-1] Initializing /data/karsten/100720104_TestglasSchott_MM63_C16h_SYTO.nd2: [testng] [2024-12-04 01:00:11,091] [pool-1-thread-8] Initializing /data/dan/120109_test.nd2: [testng] [2024-12-04 01:00:12,345] [pool-1-thread-2] Initializing /data/tom/512x512x11 1um step.nd2: [testng] [2024-12-04 01:00:12,953] [pool-1-thread-9] Initializing /data/jennet/2D001_crop.nd2: [testng] [2024-12-04 01:00:13,529] [pool-1-thread-4] Initializing /data/michael/mcammer BUT THIS FILE OPENS FINE.nd2: [testng] [2024-12-04 01:00:14,352] [pool-1-thread-11] Initializing /data/dan-dickinson/141_mChCtrl_002.nd2: [testng] [2024-12-04 01:00:15,531] [pool-1-thread-5] Initializing /data/qa-29043/Actin-Polymerization-10min-2s.nd2: [testng] [2024-12-04 01:00:16,207] [pool-1-thread-12] Initializing /data/chris/228 and 340.nd2: [testng] [2024-12-04 01:00:17,123] [pool-1-thread-3] Initializing /data/matt/Final merge.nd2: [testng] [2024-12-04 01:00:19,373] [pool-1-thread-8] Initializing /data/venu/nd-two_channel-2.nd2: [testng] [2024-12-04 01:00:20,138] [pool-1-thread-2] Initializing /data/josh/072007h.nd2: [testng] [2024-12-04 01:00:21,095] [pool-1-thread-11] Initializing /data/leon/WellA1_Seq0000.nd2: [testng] [2024-12-04 01:00:21,577] [pool-1-thread-9] Initializing /data/public/aryeh/b16_pdtB+y50__crop.nd2: [testng] [2024-12-04 01:00:24,234] [pool-1-thread-4] Initializing /data/imagesc-76438/Slide2-20-1_Region0000_ChannelBrightfield_Seq0002.nd2: [testng] [2024-12-04 01:00:27,102] [pool-1-thread-7] Initializing /data/imagesc-76438/Slide2-20-1_Region0001_ChannelBrightfield_Seq0003.nd2: [testng] [2024-12-04 01:00:31,102] [pool-1-thread-5] Initializing /data/kevin/test3.nd2: [testng] [2024-12-04 01:00:33,127] [pool-1-thread-3] Initializing /data/public/aryeh/rfp_h2a_cells_02.nd2: [testng] [2024-12-04 01:00:41,513] [pool-1-thread-2] Initializing /data/fiji-655/01.nd2: [testng] [2024-12-04 01:00:43,206] [pool-1-thread-8] Initializing /data/michael/MCammer Nikon file that wont open.nd2: [testng] [2024-12-04 01:00:43,733] [pool-1-thread-12] Initializing /data/public/jonas/header_test1.nd2: [testng] [2024-12-04 01:00:44,839] [pool-1-thread-5] Initializing /data/public/jonas/divisionByZero/290110.tranMgc005cr.nd2: [testng] [2024-12-04 01:00:49,189] [pool-1-thread-11] Initializing /data/unknown_fiji_upload/Day_2_A4_10x_Fluor_Z_Stack.nd2: [testng] [2024-12-04 01:00:51,123] [pool-1-thread-2] Initializing /data/yanmei/snapcells-vps2.nd2: [testng] [2024-12-04 01:00:51,784] [pool-1-thread-6] Initializing /data/christian/CW002_3_rfp.nd2: [testng] [2024-12-04 01:00:53,896] [pool-1-thread-8] Initializing /data/qa-28060/20191023-htirf-888.nd2: [testng] [2024-12-04 01:00:54,416] [pool-1-thread-12] Initializing /data/katherina/120312_488HP_Convallaria nueva.nd2: [testng] [2024-12-04 01:00:56,309] [pool-1-thread-11] Initializing /data/qa-4958/556_t2.nd2: [testng] [2024-12-04 01:00:58,209] [pool-1-thread-2] Initializing /data/hallie/RNAi Plate 4.nd2: [testng] [2024-12-04 01:00:59,420] [pool-1-thread-6] Initializing /data/public/aryeh/4_2_1_cont_NoMR001.nd2: [testng] [2024-12-04 01:01:03,566] [pool-1-thread-8] Initializing /data/qa-11064/t2_mp8_z4_ch3_.nd2: [testng] [2024-12-04 01:01:04,748] [pool-1-thread-12] Initializing /data/qa-7906/2591B1.jp2: [testng] [2024-12-04 01:01:07,979] [pool-1-thread-10] Initializing /data/katherina/120312_488HP_Convallaria nueva - C=1.tif: [testng] [2024-12-04 01:01:09,169] [pool-1-thread-11] Initializing /data/public/jonas/512c/nikonTest_two.nd2: [testng] [2024-12-04 01:01:10,007] [pool-1-thread-5] Initializing /data/qa-7906/2591A.jp2: [testng] [2024-12-04 01:01:15,194] [pool-1-thread-1] Initializing /data/qa-11064/t2_mp8_z4_ch3__channelsDeleted.nd2: [testng] [2024-12-04 01:01:16,774] [pool-1-thread-10] Initializing /data/rehan/P128.nd2: [testng] [2024-12-04 01:01:19,083] [pool-1-thread-11] Initializing /data/gh-2955/cluster.nd2: [testng] [2024-12-04 01:01:21,313] [pool-1-thread-8] Initializing /data/nadya/Capture1.PNG: [testng] [2024-12-04 01:01:22,713] [pool-1-thread-8] Initializing /data/public/aryeh/4_con_2_1_cot002.nd2: [testng] [2024-12-04 01:01:30,627] [pool-1-thread-9] Initializing /data/imagesc-76438/Slide2-20-2_Region0001_ChannelBrightfield_Seq0011.nd2: [testng] [2024-12-04 01:01:59,445] [pool-1-thread-11] Initializing /data/public/jonas/2.nd2: [testng] [2024-12-04 01:02:01,426] [pool-1-thread-1] Initializing /data/public/jonas/control002.nd2: [testng] [2024-12-04 01:02:06,278] [pool-1-thread-1] Initializing /data/qa-7303/CTR_012.nd2: [testng] [2024-12-04 01:02:08,421] [pool-1-thread-10] Initializing /data/kevin/sfeertjes 100 nm 10 000x 15p (1).nd2: [testng] [2024-12-04 01:02:08,980] [pool-1-thread-12] Initializing /data/public/jonas/3.nd2: [testng] [2024-12-04 01:02:30,708] [pool-1-thread-10] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_control_24h_03.nd2: [testng] [2024-12-04 01:02:32,438] [pool-1-thread-1] Initializing /data/qa-29634/20201007_2_OCT4DBD-Halo_PA64625nM_1kframe_tail_7ms_40pert_008.nd2: [testng] [2024-12-04 01:02:37,492] [pool-1-thread-5] Initializing /data/stephen/Cody_Temp_Copy_crop.nd2: [testng] [2024-12-04 01:02:38,191] [pool-1-thread-1] Initializing /data/jcb/201101064/Fig 8B imp beta-BPN MaxIP.nd2: [testng] [2024-12-04 01:02:40,389] [pool-1-thread-11] Initializing /data/cameron/CamND2.nd2: [testng] [2024-12-04 01:02:41,636] [pool-1-thread-10] Initializing /data/michael/10um skewed.nd2: [testng] [2024-12-04 01:02:43,620] [pool-1-thread-5] Initializing /data/qa-29006/Voltron_Test004.nd2: [testng] [2024-12-04 01:02:47,360] [pool-1-thread-11] Initializing /data/venu/nd-two_channel-1.nd2: [testng] [2024-12-04 01:02:48,399] [pool-1-thread-1] Initializing /data/pki/15July2011 ImClone multiwell test file.nd2: [testng] [2024-12-04 01:02:51,103] [pool-1-thread-6] Initializing /data/public/maxime/BF007.nd2: [testng] [2024-12-04 01:02:55,973] [pool-1-thread-5] Initializing /data/richard/KitWv67-72.nd2: [testng] [2024-12-04 01:02:58,993] [pool-1-thread-10] Initializing /data/helene/testseries1.nd2: [testng] [2024-12-04 01:03:00,413] [pool-1-thread-1] Initializing /data/imagesc-76438/Slide2-20-2_ChannelBrightfield_Seq0009.nd2: [testng] [2024-12-04 01:03:01,208] [pool-1-thread-11] Initializing /data/tom/1024x1024.nd2: [testng] [2024-12-04 01:03:03,403] [pool-1-thread-6] Initializing 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[pool-1-thread-7] Initializing /data/venu/nd-two_channel-0.nd2: [testng] [2024-12-04 01:04:40,486] [pool-1-thread-11] Initializing /data/venu/nd-three_channel-3.nd2: [testng] [2024-12-04 01:04:45,853] [pool-1-thread-4] Initializing /data/yarden/Session26_Well1_10x.nd2: [testng] [2024-12-04 01:04:48,198] [pool-1-thread-3] Initializing /data/public/aryeh/old_cells_02.nd2: [testng] [2024-12-04 01:04:49,256] [pool-1-thread-1] Initializing /data/richard/KitWv#67.avi: [testng] [2024-12-04 01:04:52,423] [pool-1-thread-8] Initializing /data/stefanie/nd026_xy3.nd2: [testng] [2024-12-04 01:04:53,301] [pool-1-thread-6] Initializing /data/michael/opened skewed - C=0.tif: [testng] [2024-12-04 01:04:55,111] [pool-1-thread-10] Initializing /data/kevin/DD100liposomes_1.nd2: [testng] [2024-12-04 01:04:56,061] [pool-1-thread-7] Initializing /data/qa-29035/Seq0000.nd2: [testng] [2024-12-04 01:04:57,880] [pool-1-thread-5] Initializing /data/kyle-vrtis/180627 1e Cas9 GINS collapse lag lag.nd2: [testng] [2024-12-04 01:05:00,339] [pool-1-thread-11] Initializing /data/michael/frap0041 00X 1Xeyepiece 15sec Cy5 ICAM TIRF.nd2: [testng] [2024-12-04 01:05:04,744] [pool-1-thread-3] Initializing /data/public/aryeh/qa-9507/control003.nd2: [testng] [2024-12-04 01:05:09,388] [pool-1-thread-10] Initializing /data/rehan/P128 wt pg bouton.ics: [testng] [2024-12-04 01:05:11,372] [pool-1-thread-8] Initializing /data/josh/CGE1.nd2: [testng] [2024-12-04 01:05:14,150] [pool-1-thread-7] Initializing /data/christian/missing-dimensions-test.nd2: [testng] [2024-12-04 01:05:16,677] [pool-1-thread-11] Initializing /data/public/jonas/512c/nikonTest_1.nd2: [testng] [2024-12-04 01:05:20,235] [pool-1-thread-6] Initializing /data/public/jonas/512c/wtf_alignment.nd2: [testng] [2024-12-04 01:05:22,487] [pool-1-thread-8] Initializing /data/venu/nd-three_channel-2.nd2: [testng] [2024-12-04 01:05:24,074] [pool-1-thread-2] Initializing /data/ye-chen/LOCI_YeChen_Swinburne.nd2: [testng] [2024-12-04 01:05:25,825] [pool-1-thread-7] Initializing /data/kyle/F301.nd2: [testng] [2024-12-04 01:05:28,130] [pool-1-thread-5] Initializing /data/tiao/WellC03_Seq0000.nd2: [testng] [2024-12-04 01:05:29,150] [pool-1-thread-10] Initializing /data/michael/50um_004 skewed.nd2: [testng] [2024-12-04 01:05:32,235] [pool-1-thread-11] Initializing /data/qa-7908/020514 SH003.nd2: [testng] [2024-12-04 01:05:33,028] [pool-1-thread-1] Initializing /data/venu/five_160807_control cells_4D.tif: [testng] [2024-12-04 01:05:36,037] [pool-1-thread-6] Initializing /data/henry/large image.nd2: [testng] [2024-12-04 01:05:37,324] [pool-1-thread-2] Initializing /data/qa-11064/t1_mp8_z4_chOff_005.nd2: [testng] [2024-12-04 01:05:39,608] [pool-1-thread-8] Initializing /data/nadya/flat.nd2: [testng] [2024-12-04 01:05:41,376] [pool-1-thread-5] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_conrol_24h_02.nd2: [testng] [2024-12-04 01:05:43,248] [pool-1-thread-6] Initializing /data/bernhard/962_xy1.nd2: [testng] [2024-12-04 01:05:44,012] [pool-1-thread-10] Initializing /data/plaissue/2channel-Zstack-withBinaryLayer.nd2: [testng] [2024-12-04 01:05:44,870] [pool-1-thread-11] Initializing /data/public/jonas/2112-2265.nd2: [testng] [2024-12-04 01:05:46,281] [pool-1-thread-7] Initializing /data/michael/test_MCammer.nd2: [testng] [2024-12-04 01:05:48,656] [pool-1-thread-1] Initializing /data/venu/N202-11 20x20.nd2: [testng] [2024-12-04 01:05:49,904] [pool-1-thread-8] Initializing /data/david/NDSequence012.nd2: [testng] [2024-12-04 01:05:50,758] [pool-1-thread-2] Initializing /data/gh-3565/example_metadata001.nd2: [testng] [2024-12-04 01:05:51,534] [pool-1-thread-3] Initializing /data/venu/nd-two_channel-3.nd2: [testng] [2024-12-04 01:05:53,142] [pool-1-thread-5] Initializing /data/stefanie/nd026_xy0.nd2: [testng] [2024-12-04 01:05:55,101] [pool-1-thread-10] Initializing /data/john/M900117_CBP11555_C264M2_SOL_CD31_s1.nd2: [testng] [2024-12-04 01:05:56,339] [pool-1-thread-6] Initializing /data/venu/N202.1A+7 2h.nd2: [testng] [2024-12-04 01:05:57,881] [pool-1-thread-7] Initializing /data/stefanie/200307_necl2.nd2: [testng] [2024-12-04 01:06:15,248] [pool-1-thread-1] Initializing /data/qa-9183/aaron_multi_positions.nd2: [testng] [2024-12-04 01:06:17,053] [pool-1-thread-2] Initializing /data/kevin/test1.nd2: [testng] [2024-12-04 01:06:17,753] [pool-1-thread-3] Initializing /data/qa-9207/n1e 570-wisp2 670-cdh6 -2(good 1-11)_xy1.nd2: [testng] [2024-12-04 01:06:18,496] [pool-1-thread-8] Initializing /data/jose/08_SO4_Fasc100_at_surface_w_average.nd2: [testng] [2024-12-04 01:06:21,643] [pool-1-thread-11] Initializing /data/sarah/sarah_1011.nd2: [testng] [2024-12-04 01:06:22,381] [pool-1-thread-6] Initializing /data/plaissue/4channel_Zseries.nd2: [testng] [2024-12-04 01:06:22,977] [pool-1-thread-5] Initializing /data/stephen/Cody_Temp_Copy_crop.tif: [testng] [2024-12-04 01:06:24,320] [pool-1-thread-2] Initializing /data/kaustav/cell field2.nd2: [testng] [2024-12-04 01:06:27,319] [pool-1-thread-3] Initializing /data/pki/20120730 RGB 293-S1PR1-eGFP 8 compound 24hr v1.nd2: [testng] [2024-12-04 01:06:28,792] [pool-1-thread-1] Initializing /data/michael/stopped-acquisition/ND2 file does not open MCammer.nd2: [testng] [2024-12-04 01:06:29,587] [pool-1-thread-8] Initializing /data/public/aryeh/weekend002.nd2: [testng] [2024-12-04 01:06:31,914] [pool-1-thread-10] Initializing /data/public/jonas/multicolorTest.nd2: [testng] [2024-12-04 01:06:35,871] [pool-1-thread-6] Initializing /data/kyle/B204.nd2: [testng] [2024-12-04 01:06:36,569] [pool-1-thread-11] Initializing /data/qa-4836/MGH media d10 large image_crop.nd2: [testng] [2024-12-04 01:06:40,239] [pool-1-thread-5] Initializing /data/michael/opened skewed - C=1.tif: [testng] [2024-12-04 01:06:42,872] [pool-1-thread-2] Initializing /data/david/NDSequence011.nd2: [testng] [2024-12-04 01:06:45,538] [pool-1-thread-1] Initializing /data/venu/three_160807_control cells_4D.tif: [testng] [2024-12-04 01:06:50,938] [pool-1-thread-6] Initializing /data/john/M900117_CBP11555_C264M2_GAST_T1_s1.nd2: [testng] [2024-12-04 01:06:53,034] [pool-1-thread-2] Initializing /data/jcb/201101064/Fig 8B imp beta alone-MaxIP.nd2: [testng] [2024-12-04 01:06:54,651] [pool-1-thread-5] Initializing /data/yanmei/snapcells-vps1002.nd2: [testng] [2024-12-04 01:06:56,038] [pool-1-thread-1] Initializing /data/public/karl/sample_image.nd2: [testng] [2024-12-04 01:07:01,198] [pool-1-thread-5] Initializing /data/venu/1_140508,control.nd2: [testng] [2024-12-04 01:07:02,022] [pool-1-thread-2] Initializing /data/public/jonas/512c/cag_p5_simgc_2511_70ms22s_crop.nd2: [testng] [2024-12-04 01:07:03,117] [pool-1-thread-1] Initializing /data/qa-10370/example_JPIKE.nd2: [testng] [2024-12-04 01:07:05,638] [pool-1-thread-8] Initializing /data/stefanie/nd27.nd2: [testng] [2024-12-04 01:07:09,427] [pool-1-thread-5] Initializing /data/damir/Plate000_Well1_Seq0000.nd2: [testng] [2024-12-04 01:07:10,967] [pool-1-thread-2] Initializing /data/uli/2012_04_19_CHOegfr_03.nd2: [testng] [2024-12-04 01:07:11,709] [pool-1-thread-3] Initializing /data/venu/N202-15 20x001.nd2: [testng] [2024-12-04 01:07:12,900] [pool-1-thread-8] Initializing /data/qa-17695/sample.nd2: [testng] [2024-12-04 01:07:13,511] [pool-1-thread-10] Initializing /data/public/jonas/jonas_nd2Test/Exception9_e3.nd2: [testng] [2024-12-04 01:07:14,106] [pool-1-thread-1] Initializing /data/kevin/100nm_1.nd2: [testng] [2024-12-04 01:07:16,952] [pool-1-thread-6] Initializing /data/qa-9193/60x oil line scan 1 airy mono.nd2: [testng] [2024-12-04 01:07:18,306] [pool-1-thread-11] Initializing /data/dallas/150609_m597_ut8.nd2: [testng] [2024-12-04 01:07:20,969] [pool-1-thread-2] Initializing /data/venu/six_160807_control cells_4D.tif: [testng] [2024-12-04 01:07:22,103] [pool-1-thread-10] Initializing /data/venu/nd-three_channel-0.nd2: [testng] [2024-12-04 01:07:23,495] [pool-1-thread-3] Initializing /data/qa-7536/SampleND2-ChrisL.nd2: [testng] [2024-12-04 01:07:24,821] [pool-1-thread-8] Initializing /data/michael/tiling_problem_mcammer.nd2: [testng] [2024-12-04 01:07:26,048] [pool-1-thread-6] Initializing /data/bioformats2raw-184/Round1-Slot_01-Slide_01-Region_1-Stitched-Focused.nd2: [testng] [2024-12-04 01:11:35,575] [pool-1-thread-2] Initializing /data/venu/nd-three_channel-4.nd2: [testng] [2024-12-04 01:11:37,090] [pool-1-thread-1] Initializing /data/public/jonas/512c/wtf_DIC.nd2: [testng] [2024-12-04 01:11:38,666] [pool-1-thread-10] Initializing /data/bassem/A PSF1.nd2: [testng] [2024-12-04 01:11:40,418] [pool-1-thread-8] Initializing /data/public/jonas/100217_OD122_001.nd2: [testng] [2024-12-04 01:11:41,291] [pool-1-thread-3] Initializing /data/david/_t4h f.nd2: [testng] [2024-12-04 01:11:43,644] [pool-1-thread-10] Initializing /data/yarden/KH2_Well1_4x.nd2: [testng] [2024-12-04 01:11:45,082] [pool-1-thread-2] Initializing /data/imagesc-76438/FirstFileUsed_Slide2-20-1_ChannelBrightfield_Seq0001.nd2: [testng] [2024-12-04 01:11:45,818] [pool-1-thread-1] Initializing /data/aryeh/BY_GFP-Mup1_mCHERRY-VPH1_10-7-2012_Meytal-Waiss_XYZT_GOOD.nd2: [testng] [2024-12-04 01:11:47,399] [pool-1-thread-3] Initializing /data/plaissue/4channel_Zseries_2XYpoints_withROIandBinaryLayer.nd2: [testng] [2024-12-04 01:11:48,256] [pool-1-thread-8] Initializing /data/public/jonas/movieSize/JJ_RNAi_hmr-1_001.nd2: [testng] [2024-12-04 01:11:51,340] [pool-1-thread-2] Initializing /data/strand/Reconstructed ND acquisition1.nd2: [testng] [2024-12-04 01:11:53,011] [pool-1-thread-1] Initializing /data/qa-7303/CTR011.nd2: [testng] [2024-12-04 01:11:56,778] [pool-1-thread-3] Initializing /data/qa-5042/8xyPoints_3channels_00_30m235_all8xyIdentified.nd2: [testng] [2024-12-04 01:11:57,721] [pool-1-thread-8] Initializing /data/qa-7572/cells.nd2: [testng] [2024-12-04 01:12:02,191] [pool-1-thread-2] Initializing /data/qa-5042/8xyPoints_3channels_00_30m001_latelyOnly7xyIdentified.nd2: [testng] [2024-12-04 01:12:03,577] [pool-1-thread-1] Initializing /data/christophe/A1N1_Veh_2D_B4S.nd2: [testng] [2024-12-04 01:12:34,710] [pool-1-thread-9] Initializing /data/kevin/100&210nm_coat_1.nd2: [testng] [2024-12-04 01:12:36,160] [pool-1-thread-12] Initializing /data/public/aryeh/but3_cont200-1.nd2: [testng] [2024-12-04 01:12:39,371] [pool-1-thread-3] Initializing /data/public/jonas/jonas_nd2Test/Exception_2.nd2: [testng] [2024-12-04 01:12:40,072] [pool-1-thread-10] Initializing /data/qa-31330/Hotel_02-Slot_01-Slide_01-Region_1_Stitched.nd2: [testng] [2024-12-04 01:12:40,900] [pool-1-thread-11] Initializing /data/qa-4973/CX3+MCh Long Ova(4Henry)002.nd2: [testng] [2024-12-04 01:12:41,682] [pool-1-thread-8] Initializing /data/public/aryeh/MeOh_high_fluo_007.nd2: [testng] [2024-12-04 01:12:47,359] [pool-1-thread-2] Initializing /data/michael/3 stage positions 2 ch opens out of order with LOCI .nd2: [testng] [2024-12-04 01:12:50,081] [pool-1-thread-11] Initializing /data/bernhard/962.nd2: [testng] [2024-12-04 01:12:51,613] [pool-1-thread-3] Initializing /data/michael/opens_skewed.nd2: [testng] [2024-12-04 01:12:53,669] [pool-1-thread-10] Initializing /data/karsten/100720104_TestglasSchott_MM63_C10h.nd2: [testng] [2024-12-04 01:12:56,333] [pool-1-thread-9] Initializing /data/plaissue/4channel_Zseries_withROIlayer.nd2: [testng] [2024-12-04 01:12:57,691] [pool-1-thread-8] Initializing /data/stefanie/nd026_xy2.nd2: [testng] [2024-12-04 01:13:05,758] [pool-1-thread-2] Initializing /data/venu/nd-two_channel-4.nd2: [testng] [2024-12-04 01:13:06,941] [pool-1-thread-9] Initializing /data/public/aryeh/MeOh_high_fluo_011.nd2: [testng] [2024-12-04 01:13:08,670] [pool-1-thread-8] Initializing /data/imagesc-76438/Slide2-20-2_Region0003_ChannelBrightfield_Seq0013.nd2: [testng] [2024-12-04 01:13:19,209] [pool-1-thread-2] Initializing /data/qa-7535/JJ_Controls_D_004.nd2: [testng] [2024-12-04 01:13:20,578] [pool-1-thread-3] Initializing /data/qa-10100/20141002_V019+AFP1052n3-005.nd2: [testng] [2024-12-04 01:13:21,782] [pool-1-thread-9] Initializing /data/qa-4958/521_t1.nd2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13091, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 52 minutes 0 seconds Finished: SUCCESS