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Started by upstream project "BIOFORMATS-test-repo" build number 279 originally caused by: Started by upstream project "Trigger" build number 299 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1033952640164191716.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44072_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:05:00,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:05:00,011 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 03:05:00,011 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:05:00,011 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:05:00,012 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:05:00,012 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:05:00,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:05:00,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:05:00,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:05:00,013 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:05:00,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:05:00,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:05:00,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:05:00,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:05:00,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:05:00,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:05:00,190 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:05:00,190 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:05:00,190 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:05:00,191 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:05:00,191 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 03:05:00,191 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 03:05:00,191 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 178 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-04 03:05:00,200] [main] java.version = 17.0.2 [testng] 03:05:00,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:05:00,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:05:00,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-04_03-05-00.log] [testng] 03:05:00,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-04 03:05:00,244] [main] testng.directory = /data [testng] [2024-12-04 03:05:00,244] [main] testng.configDirectory = /config [testng] [2024-12-04 03:05:00,252] [main] testng.multiplier = 1.0 [testng] [2024-12-04 03:05:00,253] [main] testng.in-memory = false [testng] [2024-12-04 03:05:00,253] [main] testng.allow-missing = false [testng] [2024-12-04 03:05:00,253] [main] user.language = en [testng] [2024-12-04 03:05:00,253] [main] user.country = ${user.country} [testng] [2024-12-04 03:05:00,254] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-04 03:06:29,991] [main] ---------------------------------------- [testng] [2024-12-04 03:06:29,991] [main] Total files: 15735 [testng] [2024-12-04 03:06:29,991] [main] Scan time: 89.737 s (5 ms/file) [testng] [2024-12-04 03:06:29,991] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-04 03:07:50,620] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 03:07:50,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:07:50,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:50,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-04_03-07-50.log] [testng] 03:07:50,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4960dcf5 - End of configuration. [testng] [2024-12-04 03:07:51,076] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 03:07:51,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:07:51,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:51,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-04_03-07-51.log] [testng] 03:07:51,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@182bcf70 - End of configuration. [testng] [2024-12-04 03:07:51,947] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 03:07:51,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:07:51,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:51,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-04_03-07-51.log] [testng] 03:07:51,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@181a0978 - End of configuration. [testng] [2024-12-04 03:07:52,378] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 03:07:52,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:07:52,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:52,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-04_03-07-52.log] [testng] 03:07:52,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44a64882 - End of configuration. [testng] [2024-12-04 03:07:53,929] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 03:07:53,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:07:53,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:53,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-04_03-07-53.log] [testng] 03:07:53,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58c2a7a0 - End of configuration. [testng] [2024-12-04 03:07:54,669] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 03:07:54,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:07:54,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:54,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-04_03-07-54.log] [testng] 03:07:54,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e3c886b - End of configuration. [testng] [2024-12-04 03:07:55,345] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 03:07:55,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:07:55,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:55,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-04_03-07-55.log] [testng] 03:07:55,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c1f9dc7 - End of configuration. [testng] [2024-12-04 03:07:55,917] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 03:07:55,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:07:55,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:55,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-04_03-07-55.log] [testng] 03:07:55,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e35d55 - End of configuration. [testng] [2024-12-04 03:07:56,542] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 03:07:56,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:07:56,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:56,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-04_03-07-56.log] [testng] 03:07:56,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ca29762 - End of configuration. [testng] [2024-12-04 03:07:57,070] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 03:07:57,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:07:57,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:57,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-04_03-07-57.log] [testng] 03:07:57,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fb51b91 - End of configuration. [testng] [2024-12-04 03:07:57,575] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 03:07:57,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:07:57,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:57,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-04_03-07-57.log] [testng] 03:07:57,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b2d131f - End of configuration. [testng] [2024-12-04 03:07:58,080] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 03:07:58,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:07:58,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:58,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-04_03-07-58.log] [testng] 03:07:58,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b511c76 - End of configuration. [testng] [2024-12-04 03:08:11,504] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-12-04 03:08:16,882] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-12-04 03:08:17,961] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-12-04 03:08:35,214] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-12-04 03:09:56,344] [pool-1-thread-5] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-12-04 03:10:00,623] [pool-1-thread-4] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-12-04 03:10:05,487] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-12-04 03:10:17,643] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-12-04 03:10:44,111] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-12-04 03:11:01,739] [pool-1-thread-4] Initializing /data/converted/michel/a.tif: [testng] [2024-12-04 03:11:03,245] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-12-04 03:11:12,105] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-12-04 03:11:19,037] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-12-04 03:11:34,848] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-12-04 03:11:44,550] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-12-04 03:11:55,308] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-12-04 03:11:58,112] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-12-04 03:12:02,943] [pool-1-thread-12] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-12-04 03:12:12,844] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-12-04 03:12:13,622] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-12-04 03:12:30,093] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-12-04 03:12:36,537] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-12-04 03:12:45,308] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-12-04 03:12:48,318] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-12-04 03:13:33,730] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-12-04 03:13:40,586] [pool-1-thread-7] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-12-04 03:13:57,314] [pool-1-thread-2] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-12-04 03:14:01,373] [pool-1-thread-8] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-12-04 03:14:10,451] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-12-04 03:14:37,320] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-12-04 03:15:09,559] [pool-1-thread-12] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-12-04 03:15:38,412] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-12-04 03:16:00,518] [pool-1-thread-12] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-12-04 03:16:18,374] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-12-04 03:16:23,276] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-12-04 03:19:09,464] [pool-1-thread-6] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-12-04 03:19:35,702] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-12-04 03:20:12,160] [pool-1-thread-4] Initializing /data/scott/Slide133-08.tif: [testng] [2024-12-04 03:20:35,050] [pool-1-thread-1] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-12-04 03:20:38,007] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-12-04 03:21:06,828] [pool-1-thread-1] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-12-04 03:21:17,528] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-12-04 03:21:43,872] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-12-04 03:21:45,735] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-12-04 03:22:10,711] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-12-04 03:23:47,277] [pool-1-thread-12] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-12-04 03:25:36,431] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-12-04 03:27:29,586] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-12-04 03:27:46,674] [pool-1-thread-10] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-12-04 03:28:05,017] [pool-1-thread-11] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-12-04 03:29:00,248] [pool-1-thread-1] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-12-04 03:29:26,643] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-12-04 03:34:17,284] [pool-1-thread-3] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-12-04 03:34:34,227] [pool-1-thread-8] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-12-04 03:34:46,462] [pool-1-thread-3] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-12-04 03:34:58,520] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-12-04 03:35:28,081] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-12-04 03:36:50,455] [pool-1-thread-4] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-12-04 03:37:17,251] [pool-1-thread-4] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-12-04 03:37:24,006] [pool-1-thread-1] Initializing /data/scott/Slide133-04.tif: [testng] [2024-12-04 03:37:30,072] [pool-1-thread-10] Initializing /data/converted/converted/2chz.tif: [testng] [2024-12-04 03:37:55,915] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-12-04 03:39:42,691] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-12-04 03:40:59,919] [pool-1-thread-10] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-12-04 03:41:09,093] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-12-04 03:41:19,378] [pool-1-thread-4] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-12-04 03:41:44,358] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-12-04 03:42:02,216] [pool-1-thread-5] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-12-04 03:42:28,016] [pool-1-thread-5] Initializing /data/converted/michel/c.tif: [testng] [2024-12-04 03:42:44,501] [pool-1-thread-4] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-12-04 03:42:46,262] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-12-04 03:43:06,926] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-12-04 03:43:08,989] [pool-1-thread-8] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-12-04 03:43:40,694] [pool-1-thread-4] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-12-04 03:45:16,414] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-12-04 03:45:56,579] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-12-04 03:46:20,523] [pool-1-thread-1] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-12-04 03:47:21,726] [pool-1-thread-3] Initializing /data/converted/dietmar/138.tif: [testng] [2024-12-04 03:48:01,376] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-12-04 03:49:10,309] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-12-04 03:50:41,651] [pool-1-thread-10] Initializing /data/converted/dietmar/137.tif: [testng] [2024-12-04 03:51:21,584] [pool-1-thread-6] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-12-04 03:51:28,498] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-12-04 03:52:12,379] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-12-04 03:52:56,295] [pool-1-thread-7] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-12-04 03:53:00,854] [pool-1-thread-8] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-12-04 03:53:02,383] [pool-1-thread-6] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-12-04 03:53:23,492] [pool-1-thread-4] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-12-04 03:53:27,757] [pool-1-thread-7] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-12-04 03:53:42,545] [pool-1-thread-8] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-12-04 03:53:46,960] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-12-04 03:53:53,108] [pool-1-thread-7] Initializing /data/scott/Slide133-11.tif: [testng] [2024-12-04 03:54:10,990] [pool-1-thread-8] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-12-04 03:54:14,516] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-12-04 03:54:18,723] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-12-04 03:54:54,061] [pool-1-thread-3] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-12-04 03:55:12,002] [pool-1-thread-1] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-12-04 03:55:15,082] [pool-1-thread-3] Initializing /data/converted/michel/d.tif: [testng] [2024-12-04 03:55:16,659] [pool-1-thread-12] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-12-04 03:55:42,061] [pool-1-thread-12] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-12-04 03:55:44,981] [pool-1-thread-3] Initializing /data/scott/Slide133-01.tif: [testng] [2024-12-04 03:56:04,323] [pool-1-thread-12] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-12-04 03:56:05,910] [pool-1-thread-6] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-12-04 03:56:11,913] [pool-1-thread-3] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-12-04 03:56:34,637] [pool-1-thread-3] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-12-04 03:56:43,137] [pool-1-thread-6] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-12-04 03:56:56,677] [pool-1-thread-10] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-12-04 03:57:00,620] [pool-1-thread-3] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-12-04 03:57:16,964] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-12-04 03:57:25,840] [pool-1-thread-3] Initializing /data/converted/nicolas/image.tif: [testng] [2024-12-04 03:57:41,175] [pool-1-thread-9] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-12-04 03:57:45,385] [pool-1-thread-3] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-12-04 03:57:50,903] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 04:35:57,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:35:57,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:35:57,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-04_04-35-57.log] [testng] 04:35:57,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41fc5625 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 91 minutes 0 seconds Finished: SUCCESS