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Started by upstream project "BIOFORMATS-test-repo" build number 280 originally caused by: Started by upstream project "Trigger" build number 300 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16254396917450021080.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44110_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:34,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:34,355 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:22:34,355 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:34,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:34,356 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:34,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:34,357 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:34,357 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:34,357 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:34,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:34,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:34,359 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:34,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:34,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:34,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:34,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:34,557 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:34,557 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:34,557 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:34,558 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:34,558 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:22:34,559 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:22:34,559 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-05 00:22:34,568] [main] java.version = 21 [testng] 00:22:34,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:34,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:34,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_00-22-34.log] [testng] 00:22:34,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-05 00:22:34,618] [main] testng.directory = /data [testng] [2024-12-05 00:22:34,618] [main] testng.configDirectory = /config [testng] [2024-12-05 00:22:34,628] [main] testng.multiplier = 1.0 [testng] [2024-12-05 00:22:34,628] [main] testng.in-memory = false [testng] [2024-12-05 00:22:34,628] [main] testng.allow-missing = false [testng] [2024-12-05 00:22:34,629] [main] user.language = en [testng] [2024-12-05 00:22:34,629] [main] user.country = ${user.country} [testng] [2024-12-05 00:22:34,629] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-05 00:22:38,646] [main] ---------------------------------------- [testng] [2024-12-05 00:22:38,646] [main] Total files: 103 [testng] [2024-12-05 00:22:38,647] [main] Scan time: 4.017 s (39 ms/file) [testng] [2024-12-05 00:22:38,647] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-05 00:22:55,163] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e4.tif: [testng] 00:22:55,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:22:55,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:55,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-05_00-22-55.log] [testng] 00:22:55,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6759a4d1 - End of configuration. [testng] [2024-12-05 00:22:55,728] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] 00:22:55,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:22:55,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:55,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-05_00-22-55.log] [testng] 00:22:55,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d0405b4 - End of configuration. [testng] [2024-12-05 00:22:55,807] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] 00:22:55,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:22:55,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:55,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-05_00-22-55.log] [testng] 00:22:55,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1aa481b7 - End of configuration. [testng] [2024-12-05 00:22:55,897] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] 00:22:55,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:22:55,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:55,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-05_00-22-55.log] [testng] 00:22:55,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23a3a56c - End of configuration. [testng] [2024-12-05 00:22:55,968] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] 00:22:55,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:22:55,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:55,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-05_00-22-55.log] [testng] 00:22:55,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5272c96d - End of configuration. [testng] [2024-12-05 00:22:56,041] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] 00:22:56,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:22:56,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:56,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-05_00-22-56.log] [testng] 00:22:56,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67bee2ae - End of configuration. [testng] [2024-12-05 00:22:56,109] [pool-1-thread-7] Initializing /data/jay/biosamplefullframetif.tif: [testng] 00:22:56,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:22:56,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:56,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-05_00-22-56.log] [testng] 00:22:56,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18349045 - End of configuration. [testng] [2024-12-05 00:22:56,630] [pool-1-thread-6] Initializing /data/jay/Carbon.34.dm3: [testng] 00:22:56,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:22:56,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:56,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-05_00-22-56.log] [testng] 00:22:56,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b59108f - End of configuration. [testng] [2024-12-05 00:22:56,677] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] 00:22:56,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:22:56,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:56,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-05_00-22-56.log] [testng] 00:22:56,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d7c1c25 - End of configuration. [testng] [2024-12-05 00:22:56,851] [pool-1-thread-4] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] 00:22:56,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:22:56,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:56,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-05_00-22-56.log] [testng] 00:22:56,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28b099e6 - End of configuration. [testng] [2024-12-05 00:22:56,912] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] 00:22:56,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:22:56,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:56,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-05_00-22-56.log] [testng] 00:22:56,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8cd8ced - End of configuration. [testng] [2024-12-05 00:22:57,032] [pool-1-thread-2] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] 00:22:57,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:22:57,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:57,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-05_00-22-57.log] [testng] 00:22:57,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ef0c82a - End of configuration. [testng] [2024-12-05 00:23:01,416] [pool-1-thread-12] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-12-05 00:23:01,604] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-12-05 00:23:02,297] [pool-1-thread-3] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-12-05 00:23:02,362] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-12-05 00:23:02,489] [pool-1-thread-8] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2024-12-05 00:23:03,814] [pool-1-thread-11] Initializing /data/jay/DMtest.dm3: [testng] [2024-12-05 00:23:04,327] [pool-1-thread-4] Initializing /data/jay/smallerfile.dm3: [testng] [2024-12-05 00:23:04,467] [pool-1-thread-6] Initializing /data/jay/dnasample.tif: [testng] [2024-12-05 00:23:04,987] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-12-05 00:23:05,371] [pool-1-thread-5] Initializing /data/qa-7642/8.dm4: [testng] [2024-12-05 00:23:06,119] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-12-05 00:23:06,438] [pool-1-thread-4] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-12-05 00:23:06,626] [pool-1-thread-1] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-12-05 00:23:08,453] [pool-1-thread-12] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-12-05 00:23:09,304] [pool-1-thread-5] Initializing /data/melissa/annotation-test.tif: [testng] [2024-12-05 00:23:10,249] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-12-05 00:23:10,594] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-12-05 00:23:10,952] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-12-05 00:23:11,178] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-12-05 00:23:11,332] [pool-1-thread-10] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-12-05 00:23:11,622] [pool-1-thread-8] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-12-05 00:23:13,944] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2024-12-05 00:23:14,336] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-12-05 00:23:15,944] [pool-1-thread-10] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-12-05 00:23:19,105] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-12-05 00:23:19,676] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-12-05 00:23:19,885] [pool-1-thread-6] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-12-05 00:23:20,865] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-12-05 00:23:21,392] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-12-05 00:23:22,160] [pool-1-thread-2] Initializing /data/jay/DMtest2.dm3: [testng] [2024-12-05 00:23:24,674] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-12-05 00:23:25,217] [pool-1-thread-1] Initializing /data/ofra/lowloss.dm3: [testng] [2024-12-05 00:23:26,056] [pool-1-thread-9] Initializing /data/samples/test-tiles.dm3: [testng] [2024-12-05 00:23:26,384] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-12-05 00:23:27,876] [pool-1-thread-2] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-12-05 00:23:30,725] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-12-05 00:23:30,898] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-12-05 00:23:31,084] [pool-1-thread-8] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-12-05 00:23:32,262] [pool-1-thread-3] Initializing /data/jay/dnasample1.dm3: [testng] [2024-12-05 00:23:32,885] [pool-1-thread-4] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-12-05 00:23:33,474] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-12-05 00:23:34,360] [pool-1-thread-9] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-12-05 00:23:36,032] [pool-1-thread-10] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-12-05 00:23:36,283] [pool-1-thread-6] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-12-05 00:23:36,617] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-12-05 00:23:37,372] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-12-05 00:23:37,690] [pool-1-thread-1] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-12-05 00:23:37,896] [pool-1-thread-12] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2024-12-05 00:23:40,236] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-12-05 00:23:40,907] [pool-1-thread-3] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-12-05 00:23:41,170] [pool-1-thread-4] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-12-05 00:23:41,696] [pool-1-thread-7] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-12-05 00:23:42,158] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-12-05 00:23:42,845] [pool-1-thread-5] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-12-05 00:23:44,146] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-12-05 00:23:44,447] [pool-1-thread-2] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-12-05 00:23:46,481] [pool-1-thread-11] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-12-05 00:23:47,955] [pool-1-thread-4] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-12-05 00:23:49,395] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-12-05 00:23:50,183] [pool-1-thread-10] Initializing /data/jay/camtest1.dm3: [testng] [2024-12-05 00:23:50,984] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-12-05 00:23:52,169] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-12-05 00:23:52,879] [pool-1-thread-6] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-12-05 00:23:53,199] [pool-1-thread-9] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-12-05 00:23:53,404] [pool-1-thread-12] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-12-05 00:23:53,843] [pool-1-thread-7] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-12-05 00:23:58,526] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-12-05 00:23:59,002] [pool-1-thread-1] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-12-05 00:23:59,941] [pool-1-thread-5] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-12-05 00:24:01,834] [pool-1-thread-10] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-12-05 00:24:02,587] [pool-1-thread-6] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2024-12-05 00:24:03,102] [pool-1-thread-9] Initializing /data/jay/ViewDMtest.dm3: [testng] [2024-12-05 00:24:04,909] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-12-05 00:24:05,378] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2024-12-05 00:24:05,586] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-12-05 00:24:06,450] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-12-05 00:24:06,635] [pool-1-thread-4] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-12-05 00:24:08,467] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-12-05 00:24:09,033] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-12-05 00:24:09,261] [pool-1-thread-2] Initializing /data/qa-21761/example.dm4: [testng] [2024-12-05 00:24:11,030] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-12-05 00:24:11,785] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-12-05 00:24:12,012] [pool-1-thread-1] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-12-05 00:24:13,052] [pool-1-thread-12] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-12-05 00:24:13,241] [pool-1-thread-9] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-12-05 00:24:15,874] [pool-1-thread-11] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 55 seconds Finished: SUCCESS