![[Jenkins]](/jenkins/static/28c89a1b/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 280 originally caused by: Started by upstream project "Trigger" build number 300 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins15097924386242823282.sh + '[' pict = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44158_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:58:01,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:58:01,122 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:58:01,122 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:58:01,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:58:01,123 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:58:01,123 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:58:01,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:58:01,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:58:01,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:58:01,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:58:01,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:58:01,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:58:01,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:58:01,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:58:01,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:58:01,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:58:01,317 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:58:01,318 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:58:01,318 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:58:01,318 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:58:01,318 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:58:01,319 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:58:01,319 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-05 00:58:01,329] [main] java.version = 21 [testng] 00:58:01,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:58:01,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:01,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_00-58-01.log] [testng] 00:58:01,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-05 00:58:01,377] [main] testng.directory = /data [testng] [2024-12-05 00:58:01,377] [main] testng.configDirectory = /config [testng] [2024-12-05 00:58:01,387] [main] testng.multiplier = 1.0 [testng] [2024-12-05 00:58:01,388] [main] testng.in-memory = false [testng] [2024-12-05 00:58:01,388] [main] testng.allow-missing = false [testng] [2024-12-05 00:58:01,388] [main] user.language = en [testng] [2024-12-05 00:58:01,388] [main] user.country = ${user.country} [testng] [2024-12-05 00:58:01,389] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-05 00:58:01,972] [main] ---------------------------------------- [testng] [2024-12-05 00:58:01,972] [main] Total files: 25 [testng] [2024-12-05 00:58:01,972] [main] Scan time: 0.583 s (23 ms/file) [testng] [2024-12-05 00:58:01,972] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-05 00:58:07,130] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:58:07,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:58:07,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:07,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-05_00-58-07.log] [testng] 00:58:07,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@159769b6 - End of configuration. [testng] [2024-12-05 00:58:07,262] [pool-1-thread-12] Initializing /data/brian/images/WHT.PCT: [testng] 00:58:07,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:58:07,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:07,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-05_00-58-07.log] [testng] 00:58:07,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6111b044 - End of configuration. [testng] [2024-12-05 00:58:07,543] [pool-1-thread-11] Initializing /data/jqd/mireSixteen.pict: [testng] 00:58:07,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:58:07,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:07,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-05_00-58-07.log] [testng] 00:58:07,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a9ec837 - End of configuration. [testng] [2024-12-05 00:58:07,727] [pool-1-thread-10] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 00:58:07,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:58:07,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:07,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-05_00-58-07.log] [testng] 00:58:07,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d3968fb - End of configuration. [testng] [2024-12-05 00:58:07,915] [pool-1-thread-9] Initializing /data/misc/planet2.pict: [testng] 00:58:07,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:58:07,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:07,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-05_00-58-07.log] [testng] 00:58:07,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d1d239e - End of configuration. [testng] [2024-12-05 00:58:08,219] [pool-1-thread-8] Initializing /data/brian/images/GRN.PCT: [testng] 00:58:08,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:58:08,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:08,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-05_00-58-08.log] [testng] 00:58:08,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bcb1231 - End of configuration. [testng] [2024-12-05 00:58:08,463] [pool-1-thread-7] Initializing /data/brian/images/YEL.PCT: [testng] 00:58:08,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:58:08,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:08,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-05_00-58-08.log] [testng] 00:58:08,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ba95b59 - End of configuration. [testng] [2024-12-05 00:58:08,925] [pool-1-thread-6] Initializing /data/misc/planet.png: [testng] 00:58:08,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:58:08,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:08,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-05_00-58-08.log] [testng] 00:58:08,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dedd677 - End of configuration. [testng] [2024-12-05 00:58:08,939] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 00:58:08,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:58:08,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:08,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-05_00-58-08.log] [testng] 00:58:08,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@201b024c - End of configuration. [testng] [2024-12-05 00:58:09,167] [pool-1-thread-4] Initializing /data/brian/images/BLU.PCT: [testng] 00:58:09,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:58:09,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:09,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-05_00-58-09.log] [testng] 00:58:09,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b89bd71 - End of configuration. [testng] [2024-12-05 00:58:09,920] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 00:58:09,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:58:09,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:09,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-05_00-58-09.log] [testng] 00:58:09,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cac88ed - End of configuration. [testng] [2024-12-05 00:58:10,157] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 00:58:10,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:58:10,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:10,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-05_00-58-10.log] [testng] 00:58:10,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67ced753 - End of configuration. [testng] [2024-12-05 00:58:12,482] [pool-1-thread-6] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-12-05 00:58:13,686] [pool-1-thread-11] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2024-12-05 00:58:13,787] [pool-1-thread-10] Initializing /data/jqd/mire32.pict: [testng] [2024-12-05 00:58:13,856] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-12-05 00:58:14,036] [pool-1-thread-9] Initializing /data/misc/planet.pict: [testng] [2024-12-05 00:58:14,231] [pool-1-thread-8] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-12-05 00:58:14,300] [pool-1-thread-7] Initializing /data/brian/images/BLK.PCT: [testng] [2024-12-05 00:58:14,454] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-12-05 00:58:14,541] [pool-1-thread-4] Initializing /data/misc/swlogo.pict: [testng] [2024-12-05 00:58:14,716] [pool-1-thread-3] Initializing /data/brian/images/RED.PCT: [testng] [2024-12-05 00:58:15,383] [pool-1-thread-5] Initializing /data/brian/images/VENUS.pct: [testng] [2024-12-05 00:58:16,005] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-12-05 00:58:16,879] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 seconds Finished: SUCCESS