![[Jenkins]](/jenkins/static/28c89a1b/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 280 originally caused by: Started by upstream project "Trigger" build number 300 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins18129630868836437453.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44241_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:17:08,234 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:17:08,235 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 04:17:08,235 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:17:08,236 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:17:08,237 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:17:08,237 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:17:08,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:17:08,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:17:08,238 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:17:08,238 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:17:08,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:17:08,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:17:08,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:17:08,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:17:08,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:17:08,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:17:08,421 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:17:08,421 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:17:08,421 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:17:08,422 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:17:08,422 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 04:17:08,422 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 04:17:08,423 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-05 04:17:08,431] [main] java.version = 21 [testng] 04:17:08,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:17:08,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:08,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_04-17-08.log] [testng] 04:17:08,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-05 04:17:08,477] [main] testng.directory = /data [testng] [2024-12-05 04:17:08,477] [main] testng.configDirectory = /config [testng] [2024-12-05 04:17:08,486] [main] testng.multiplier = 1.0 [testng] [2024-12-05 04:17:08,486] [main] testng.in-memory = false [testng] [2024-12-05 04:17:08,486] [main] testng.allow-missing = false [testng] [2024-12-05 04:17:08,486] [main] user.language = en [testng] [2024-12-05 04:17:08,486] [main] user.country = ${user.country} [testng] [2024-12-05 04:17:08,486] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-05 04:17:12,834] [main] ---------------------------------------- [testng] [2024-12-05 04:17:12,834] [main] Total files: 32 [testng] [2024-12-05 04:17:12,834] [main] Scan time: 4.348 s (135 ms/file) [testng] [2024-12-05 04:17:12,834] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-05 04:17:51,236] [pool-1-thread-1] Initializing /data/qa-16880/c-src v7.1sc: [testng] 04:17:51,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:17:51,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:51,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-05_04-17-51.log] [testng] 04:17:51,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33791fb5 - End of configuration. [testng] [2024-12-05 04:17:51,913] [pool-1-thread-12] Initializing /data/david/Opened in imageJ.tiff: [testng] 04:17:51,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:17:51,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:51,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-05_04-17-51.log] [testng] 04:17:51,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d8a8eb8 - End of configuration. [testng] [2024-12-05 04:17:53,953] [pool-1-thread-11] Initializing /data/qa-29459/bad.1sc: [testng] 04:17:53,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:17:53,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:53,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-05_04-17-53.log] [testng] 04:17:53,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9f082a5 - End of configuration. [testng] [2024-12-05 04:17:54,559] [pool-1-thread-10] Initializing /data/keith/test2.1sc: [testng] 04:17:54,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:17:54,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:54,560 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-05_04-17-54.log] [testng] 04:17:54,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e3fb1eb - End of configuration. [testng] [2024-12-05 04:17:55,189] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] 04:17:55,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:17:55,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:55,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-05_04-17-55.log] [testng] 04:17:55,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@132be593 - End of configuration. [testng] [2024-12-05 04:17:55,810] [pool-1-thread-8] Initializing /data/geert/good example1.1sc: [testng] 04:17:55,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:17:55,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:55,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-05_04-17-55.log] [testng] 04:17:55,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@177b6011 - End of configuration. [testng] [2024-12-05 04:17:56,589] [pool-1-thread-7] Initializing /data/keith/pg020410saur3.1sc: [testng] 04:17:56,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:17:56,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:56,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-05_04-17-56.log] [testng] 04:17:56,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25553984 - End of configuration. [testng] [2024-12-05 04:17:57,508] [pool-1-thread-6] Initializing /data/qa-29469/good.1sc: [testng] 04:17:57,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:17:57,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:57,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-05_04-17-57.log] [testng] 04:17:57,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2080915 - End of configuration. [testng] [2024-12-05 04:17:58,152] [pool-1-thread-5] Initializing /data/keith/test.1sc: [testng] 04:17:58,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:17:58,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:58,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-05_04-17-58.log] [testng] 04:17:58,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@456b741a - End of configuration. [testng] [2024-12-05 04:17:58,728] [pool-1-thread-4] Initializing /data/qa-29469/bad2.1sc: [testng] 04:17:58,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:17:58,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:58,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-05_04-17-58.log] [testng] 04:17:58,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eaa8ab - End of configuration. [testng] [2024-12-05 04:17:59,366] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] 04:17:59,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:17:59,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:59,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-05_04-17-59.log] [testng] 04:17:59,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@679e52d4 - End of configuration. [testng] [2024-12-05 04:18:01,909] [pool-1-thread-2] Initializing /data/geert/bad example1.1sc.jpg: [testng] 04:18:01,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:18:01,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:01,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-05_04-18-01.log] [testng] 04:18:01,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cd3686b - End of configuration. [testng] [2024-12-05 04:18:09,679] [pool-1-thread-7] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-12-05 04:18:09,966] [pool-1-thread-10] Initializing /data/adrian/test_img.1sc: [testng] [2024-12-05 04:18:10,792] [pool-1-thread-5] Initializing /data/geert/bad example1.1sc: [testng] [2024-12-05 04:18:11,427] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2024-12-05 04:18:13,616] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2024-12-05 04:18:16,997] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-12-05 04:18:17,636] [pool-1-thread-4] Initializing /data/qa-29469/bad3.1sc: [testng] [2024-12-05 04:18:18,207] [pool-1-thread-9] Initializing /data/samples/Criterion.1sc: [testng] [2024-12-05 04:18:18,963] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2024-12-05 04:18:20,421] [pool-1-thread-2] Initializing /data/samples/imagesEight.1sc: [testng] [2024-12-05 04:18:28,169] [pool-1-thread-2] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-12-05 04:18:30,953] [pool-1-thread-10] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2024-12-05 04:18:33,423] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-12-05 04:18:34,262] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-12-05 04:18:35,025] [pool-1-thread-5] Initializing /data/keith/PF020328saur v3.1sc: [testng] [2024-12-05 04:18:36,298] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-12-05 04:18:39,208] [pool-1-thread-12] Initializing /data/geert/bad example1.jpg: [testng] [2024-12-05 04:18:39,411] [pool-1-thread-8] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [2024-12-05 04:18:40,015] [pool-1-thread-6] Initializing /data/qa-29459/bad.jpg: [testng] [2024-12-05 04:18:40,183] [pool-1-thread-7] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 49 seconds Finished: SUCCESS