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Started by upstream project "BIOFORMATS-test-repo" build number 280 originally caused by: Started by upstream project "Trigger" build number 300 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins13610221098180786403.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44263_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:18:42,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:18:42,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 05:18:42,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:18:42,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:18:42,300 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:18:42,300 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:18:42,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:18:42,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:18:42,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:18:42,302 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:18:42,302 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:18:42,302 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:18:42,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:18:42,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:18:42,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:18:42,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:18:42,495 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:18:42,496 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:18:42,496 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:18:42,496 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:18:42,496 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 05:18:42,497 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 05:18:42,497 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-05 05:18:42,506] [main] java.version = 21 [testng] 05:18:42,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:18:42,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:18:42,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_05-18-42.log] [testng] 05:18:42,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-05 05:18:42,554] [main] testng.directory = /data [testng] [2024-12-05 05:18:42,554] [main] testng.configDirectory = /config [testng] [2024-12-05 05:18:42,563] [main] testng.multiplier = 1.0 [testng] [2024-12-05 05:18:42,564] [main] testng.in-memory = false [testng] [2024-12-05 05:18:42,564] [main] testng.allow-missing = false [testng] [2024-12-05 05:18:42,564] [main] user.language = en [testng] [2024-12-05 05:18:42,564] [main] user.country = ${user.country} [testng] [2024-12-05 05:18:42,564] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-05 05:19:06,925] [main] ---------------------------------------- [testng] [2024-12-05 05:19:06,925] [main] Total files: 31 [testng] [2024-12-05 05:19:06,925] [main] Scan time: 24.361 s (785 ms/file) [testng] [2024-12-05 05:19:06,926] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-05 05:19:35,830] [pool-1-thread-1] Initializing /data/kraig/head.jp2: [testng] 05:19:35,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:19:35,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:35,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-05_05-19-35.log] [testng] 05:19:35,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f05e70b - End of configuration. [testng] [2024-12-05 05:19:36,519] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2: [testng] 05:19:36,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:19:36,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:36,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-05_05-19-36.log] [testng] 05:19:36,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2359a202 - End of configuration. [testng] [2024-12-05 05:19:37,132] [pool-1-thread-11] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 05:19:37,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:19:37,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:37,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-05_05-19-37.log] [testng] 05:19:37,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60a01aef - End of configuration. [testng] [2024-12-05 05:19:38,246] [pool-1-thread-10] Initializing /data/venu/Multichannel 3a.jpg: [testng] 05:19:38,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:19:38,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:38,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-05_05-19-38.log] [testng] 05:19:38,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@194b2e78 - End of configuration. [testng] [2024-12-05 05:19:38,474] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 05:19:38,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:19:38,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:38,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-05_05-19-38.log] [testng] 05:19:38,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@474d1fdf - End of configuration. [testng] [2024-12-05 05:19:40,019] [pool-1-thread-8] Initializing /data/vikram/Captured 3.jp2: [testng] 05:19:40,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:19:40,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:40,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-05_05-19-40.log] [testng] 05:19:40,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b3a2f01 - End of configuration. [testng] [2024-12-05 05:19:40,999] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jpc: [testng] 05:19:40,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:19:40,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:41,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-05_05-19-41.log] [testng] 05:19:41,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21bad1a1 - End of configuration. [testng] [2024-12-05 05:19:41,890] [pool-1-thread-6] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 05:19:41,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:19:41,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:41,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-05_05-19-41.log] [testng] 05:19:41,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6052dbd0 - End of configuration. [testng] [2024-12-05 05:19:42,747] [pool-1-thread-5] Initializing /data/big-images/2kx2k.jpf: [testng] 05:19:42,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:19:42,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:42,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-05_05-19-42.log] [testng] 05:19:42,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f06ac30 - End of configuration. [testng] [2024-12-05 05:19:43,613] [pool-1-thread-4] Initializing /data/david/multichannel-2d test.jp2: [testng] 05:19:43,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:19:43,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:43,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-05_05-19-43.log] [testng] 05:19:43,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67628b32 - End of configuration. [testng] [2024-12-05 05:19:44,484] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 05:19:44,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:19:44,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:44,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-05_05-19-44.log] [testng] 05:19:44,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@de3f435 - End of configuration. [testng] [2024-12-05 05:19:45,326] [pool-1-thread-2] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] 05:19:45,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:19:45,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:45,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-05_05-19-45.log] [testng] 05:19:45,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fba5d2f - End of configuration. [testng] [2024-12-05 05:19:51,300] [pool-1-thread-10] Initializing /data/vikram/Captured 5.jp2: [testng] [2024-12-05 05:19:52,516] [pool-1-thread-7] Initializing /data/david/000000_000001.jpx: [testng] [2024-12-05 05:19:53,244] [pool-1-thread-8] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-12-05 05:19:53,950] [pool-1-thread-12] Initializing /data/vikram/Captured 4.jp2: [testng] [2024-12-05 05:19:54,613] [pool-1-thread-1] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-12-05 05:19:57,371] [pool-1-thread-9] Initializing /data/venu/Multichannel 3.jp2: [testng] [2024-12-05 05:19:59,472] [pool-1-thread-6] Initializing /data/frans/flower.jp2: [testng] [2024-12-05 05:20:00,657] [pool-1-thread-10] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-12-05 05:20:02,724] [pool-1-thread-5] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-12-05 05:20:03,733] [pool-1-thread-12] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-12-05 05:20:06,448] [pool-1-thread-1] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-12-05 05:20:08,346] [pool-1-thread-3] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-12-05 05:20:10,854] [pool-1-thread-7] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-12-05 05:20:14,044] [pool-1-thread-10] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-12-05 05:20:15,781] [pool-1-thread-8] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-12-05 05:20:17,346] [pool-1-thread-9] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-12-05 05:20:18,094] [pool-1-thread-1] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2024-12-05 05:20:21,569] [pool-1-thread-10] Initializing /data/david/cy5-tph.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 50 seconds Finished: SUCCESS