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Started by upstream project "BIOFORMATS-test-repo" build number 281 originally caused by: Started by upstream project "Trigger" build number 301 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6748210453590141541.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44400_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:45:14,282 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:45:14,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:45:14,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:45:14,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:45:14,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:45:14,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:45:14,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:45:14,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:45:14,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:45:14,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:45:14,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:45:14,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:45:14,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:45:14,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:45:14,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:45:14,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:45:14,554 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:45:14,554 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:45:14,554 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:45:14,555 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:45:14,555 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:45:14,555 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:45:14,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 268 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-06 03:45:14,566] [main] java.version = 1.8.0_342 [testng] 03:45:14,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:45:14,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:14,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_03-45-14.log] [testng] 03:45:14,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-06 03:45:14,626] [main] testng.directory = /data [testng] [2024-12-06 03:45:14,626] [main] testng.configDirectory = /config [testng] [2024-12-06 03:45:14,638] [main] testng.multiplier = 1.0 [testng] [2024-12-06 03:45:14,639] [main] testng.in-memory = false [testng] [2024-12-06 03:45:14,639] [main] testng.allow-missing = false [testng] [2024-12-06 03:45:14,639] [main] user.language = en [testng] [2024-12-06 03:45:14,639] [main] user.country = ${user.country} [testng] [2024-12-06 03:45:14,639] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-06 03:45:15,338] [main] ---------------------------------------- [testng] [2024-12-06 03:45:15,338] [main] Total files: 21 [testng] [2024-12-06 03:45:15,338] [main] Scan time: 0.699 s (33 ms/file) [testng] [2024-12-06 03:45:15,338] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-06 03:45:17,941] [pool-1-thread-1] Initializing /data/samples/daniel_coltri_two.png: [testng] 03:45:17,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:45:17,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:17,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_03-45-17.log] [testng] 03:45:17,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22d817db - End of configuration. [testng] [2024-12-06 03:45:17,999] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 03:45:18,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:45:18,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:18,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_03-45-18.log] [testng] 03:45:18,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e445f16 - End of configuration. [testng] [2024-12-06 03:45:18,018] [pool-1-thread-11] Initializing /data/colin/test.sfstdge.png: [testng] 03:45:18,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:45:18,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:18,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_03-45-18.log] [testng] 03:45:18,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a3caf60 - End of configuration. [testng] [2024-12-06 03:45:18,039] [pool-1-thread-10] Initializing /data/samples/william_wong01.png: [testng] 03:45:18,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:45:18,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:18,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_03-45-18.log] [testng] 03:45:18,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45e19475 - End of configuration. [testng] [2024-12-06 03:45:18,060] [pool-1-thread-9] Initializing /data/samples/william_wong05.png: [testng] 03:45:18,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:45:18,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:18,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_03-45-18.log] [testng] 03:45:18,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11b20067 - End of configuration. [testng] [2024-12-06 03:45:18,084] [pool-1-thread-8] Initializing /data/qa-7473/n.tif: [testng] 03:45:18,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:45:18,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:18,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_03-45-18.log] [testng] 03:45:18,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48cae563 - End of configuration. [testng] [2024-12-06 03:45:18,784] [pool-1-thread-7] Initializing /data/samples/monkey_apng.png: [testng] 03:45:18,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:45:18,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:18,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_03-45-18.log] [testng] 03:45:18,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ab0c96 - End of configuration. [testng] [2024-12-06 03:45:18,818] [pool-1-thread-6] Initializing /data/samples/phug_logo.png: [testng] 03:45:18,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:45:18,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:18,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_03-45-18.log] [testng] 03:45:18,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa9fcbe - End of configuration. [testng] [2024-12-06 03:45:18,850] [pool-1-thread-5] Initializing /data/samples/spinfox.png: [testng] 03:45:18,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:45:18,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:18,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_03-45-18.log] [testng] 03:45:18,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@652c9f5 - End of configuration. [testng] [2024-12-06 03:45:18,881] [pool-1-thread-4] Initializing /data/samples/MoonPhases.png: [testng] 03:45:18,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:45:18,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:18,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_03-45-18.log] [testng] 03:45:18,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1980ed5 - End of configuration. [testng] [2024-12-06 03:45:18,914] [pool-1-thread-3] Initializing /data/samples/orbit.png: [testng] 03:45:18,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:45:18,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:18,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_03-45-18.log] [testng] 03:45:18,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f3b7de6 - End of configuration. [testng] [2024-12-06 03:45:18,947] [pool-1-thread-2] Initializing /data/samples/joanna_viera01.png: [testng] 03:45:18,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:45:18,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:18,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_03-45-18.log] [testng] 03:45:18,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42d3203b - End of configuration. [testng] [2024-12-06 03:45:21,476] [pool-1-thread-1] Initializing /data/qa-7473/x.png: [testng] [2024-12-06 03:45:21,518] [pool-1-thread-9] Initializing /data/samples/william_wong04.png: [testng] [2024-12-06 03:45:21,563] [pool-1-thread-11] Initializing /data/samples/Sun.png: [testng] [2024-12-06 03:45:21,611] [pool-1-thread-2] Initializing /data/samples/Matrix.png: [testng] [2024-12-06 03:45:21,992] [pool-1-thread-12] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-12-06 03:45:22,032] [pool-1-thread-3] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-12-06 03:45:22,072] [pool-1-thread-10] Initializing /data/samples/StarV838.png: [testng] [2024-12-06 03:45:22,108] [pool-1-thread-4] Initializing /data/samples/chompy2.png: [testng] [2024-12-06 03:45:22,147] [pool-1-thread-7] Initializing /data/samples/william_wong02.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 15 seconds Finished: SUCCESS