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Started by upstream project "BIOFORMATS-test-repo" build number 281 originally caused by: Started by upstream project "Trigger" build number 301 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins10045210127022233126.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44402_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:46:58,826 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:46:58,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:46:58,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:46:58,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:46:58,829 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:46:58,829 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:46:58,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:46:58,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:46:58,830 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:46:58,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:46:58,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:46:58,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:46:59,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:46:59,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:46:59,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:46:59,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:46:59,078 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:46:59,078 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:46:59,078 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:46:59,079 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:46:59,079 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:46:59,080 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:46:59,080 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 250 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-06 03:46:59,089] [main] java.version = 1.8.0_342 [testng] 03:46:59,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:46:59,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:46:59,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_03-46-59.log] [testng] 03:46:59,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-06 03:46:59,140] [main] testng.directory = /data [testng] [2024-12-06 03:46:59,140] [main] testng.configDirectory = /config [testng] [2024-12-06 03:46:59,152] [main] testng.multiplier = 1.0 [testng] [2024-12-06 03:46:59,153] [main] testng.in-memory = false [testng] [2024-12-06 03:46:59,153] [main] testng.allow-missing = false [testng] [2024-12-06 03:46:59,153] [main] user.language = en [testng] [2024-12-06 03:46:59,153] [main] user.country = ${user.country} [testng] [2024-12-06 03:46:59,153] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-06 03:49:12,183] [main] ---------------------------------------- [testng] [2024-12-06 03:49:12,183] [main] Total files: 15735 [testng] [2024-12-06 03:49:12,184] [main] Scan time: 133.03 s (8 ms/file) [testng] [2024-12-06 03:49:12,184] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-06 03:52:24,861] [pool-1-thread-1] Initializing /data/converted/converted/mri-stack.tif: [testng] 03:52:24,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:52:24,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:24,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_03-52-24.log] [testng] 03:52:24,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504e2da8 - End of configuration. [testng] [2024-12-06 03:52:25,799] [pool-1-thread-12] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] 03:52:25,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:52:25,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:25,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_03-52-25.log] [testng] 03:52:25,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21374a45 - End of configuration. [testng] [2024-12-06 03:52:26,880] [pool-1-thread-11] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] 03:52:26,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:52:26,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:26,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_03-52-26.log] [testng] 03:52:26,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11e11685 - End of configuration. [testng] [2024-12-06 03:52:28,068] [pool-1-thread-10] Initializing /data/converted/kelsey/432x342BW.tif: [testng] 03:52:28,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:52:28,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:28,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_03-52-28.log] [testng] 03:52:28,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3555c8d5 - End of configuration. [testng] [2024-12-06 03:52:28,839] [pool-1-thread-9] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] 03:52:28,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:52:28,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:28,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_03-52-28.log] [testng] 03:52:28,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cebf5a8 - End of configuration. [testng] [2024-12-06 03:52:29,808] [pool-1-thread-8] Initializing /data/converted/converted/2chz.tif: [testng] 03:52:29,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:52:29,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:29,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_03-52-29.log] [testng] 03:52:29,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68d58255 - End of configuration. [testng] [2024-12-06 03:52:30,837] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] 03:52:30,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:52:30,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:30,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_03-52-30.log] [testng] 03:52:30,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@619ee1d9 - End of configuration. [testng] [2024-12-06 03:52:31,908] [pool-1-thread-6] Initializing /data/converted/dietmar/138.tif: [testng] 03:52:31,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:52:31,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:31,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_03-52-31.log] [testng] 03:52:31,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@540bdbec - End of configuration. [testng] [2024-12-06 03:52:33,053] [pool-1-thread-5] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 03:52:33,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:52:33,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:33,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_03-52-33.log] [testng] 03:52:33,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40239f13 - End of configuration. [testng] [2024-12-06 03:52:35,180] [pool-1-thread-4] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] 03:52:35,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:52:35,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:35,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_03-52-35.log] [testng] 03:52:35,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@480adb95 - End of configuration. [testng] [2024-12-06 03:52:36,970] [pool-1-thread-3] Initializing /data/converted/kelsey/650x514BW.tif: [testng] 03:52:36,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:52:36,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:36,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_03-52-36.log] [testng] 03:52:36,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e7a5734 - End of configuration. [testng] [2024-12-06 03:52:39,292] [pool-1-thread-2] Initializing /data/converted/converted/damian.tif: [testng] 03:52:39,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:52:39,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:39,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_03-52-39.log] [testng] 03:52:39,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a67021b - End of configuration. [testng] [2024-12-06 03:53:09,476] [pool-1-thread-1] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-12-06 03:53:10,880] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-12-06 03:53:12,406] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-12-06 03:53:13,793] [pool-1-thread-3] Initializing /data/scott/Slide133-04.tif: [testng] [2024-12-06 03:53:38,618] [pool-1-thread-1] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-12-06 03:53:42,490] [pool-1-thread-3] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-12-06 03:53:55,905] [pool-1-thread-12] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-12-06 03:54:09,558] [pool-1-thread-3] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-12-06 03:54:11,716] [pool-1-thread-1] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-12-06 03:55:26,377] [pool-1-thread-8] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-12-06 03:55:54,372] [pool-1-thread-11] Initializing /data/scott/Slide133-11.tif: [testng] [2024-12-06 03:55:58,541] [pool-1-thread-8] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-12-06 03:56:00,086] [pool-1-thread-4] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-12-06 03:56:30,876] [pool-1-thread-11] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-12-06 03:56:47,003] [pool-1-thread-8] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-12-06 03:57:17,133] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-12-06 03:57:19,974] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-12-06 03:57:38,365] [pool-1-thread-2] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-12-06 03:58:05,256] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-12-06 04:00:04,178] [pool-1-thread-9] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-12-06 04:00:47,357] [pool-1-thread-9] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-12-06 04:01:06,421] [pool-1-thread-7] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-12-06 04:01:38,919] [pool-1-thread-9] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-12-06 04:01:58,343] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-12-06 04:02:01,616] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-12-06 04:03:26,772] [pool-1-thread-10] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-12-06 04:06:16,073] [pool-1-thread-8] Initializing /data/othmar/mozaic.tif: [testng] [2024-12-06 04:08:26,223] [pool-1-thread-9] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-12-06 04:10:14,789] [pool-1-thread-1] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-12-06 04:10:47,622] [pool-1-thread-11] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-12-06 04:12:16,797] [pool-1-thread-8] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-12-06 04:12:42,023] [pool-1-thread-4] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-12-06 04:12:52,433] [pool-1-thread-8] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-12-06 04:13:22,560] [pool-1-thread-8] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-12-06 04:14:21,630] [pool-1-thread-7] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-12-06 04:15:01,873] [pool-1-thread-11] Initializing /data/scott/Slide133-01.tif: [testng] [2024-12-06 04:15:34,628] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-12-06 04:15:39,003] [pool-1-thread-11] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-12-06 04:15:41,757] [pool-1-thread-7] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-12-06 04:16:13,740] [pool-1-thread-11] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-12-06 04:21:22,463] [pool-1-thread-11] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-12-06 04:22:02,967] [pool-1-thread-11] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-12-06 04:25:20,414] [pool-1-thread-6] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-12-06 04:25:41,319] [pool-1-thread-5] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-12-06 04:25:56,485] [pool-1-thread-10] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-12-06 04:26:08,824] [pool-1-thread-4] Initializing /data/converted/dietmar/137.tif: [testng] [2024-12-06 04:26:30,002] [pool-1-thread-5] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-12-06 04:26:35,557] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-12-06 04:30:38,637] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-12-06 04:35:18,601] [pool-1-thread-6] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-12-06 04:36:13,933] [pool-1-thread-9] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-12-06 04:37:20,463] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-12-06 04:38:43,216] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-12-06 04:39:23,089] [pool-1-thread-10] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-12-06 04:40:15,371] [pool-1-thread-9] Initializing /data/converted/sebastien/test.tif: [testng] [2024-12-06 04:42:16,750] [pool-1-thread-1] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-12-06 04:43:50,520] [pool-1-thread-10] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-12-06 04:44:02,792] [pool-1-thread-3] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-12-06 04:45:20,058] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-12-06 04:47:32,860] [pool-1-thread-3] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-12-06 04:50:15,853] [pool-1-thread-4] Initializing /data/converted/michel/c.tif: [testng] [2024-12-06 04:50:18,296] [pool-1-thread-2] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-12-06 04:51:07,824] [pool-1-thread-4] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-12-06 04:51:35,602] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-12-06 04:51:47,915] [pool-1-thread-4] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-12-06 04:51:49,864] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-12-06 04:52:39,975] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-12-06 04:52:57,348] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-12-06 04:53:51,337] [pool-1-thread-10] Initializing /data/converted/michel/e.tif: [testng] [2024-12-06 04:54:05,705] [pool-1-thread-9] Initializing /data/converted/nicolas/image.tif: [testng] [2024-12-06 04:54:39,204] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-12-06 04:55:07,934] [pool-1-thread-10] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-12-06 04:55:56,095] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-12-06 04:56:18,678] [pool-1-thread-1] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-12-06 05:00:39,782] [pool-1-thread-1] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-12-06 05:01:32,297] [pool-1-thread-1] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-12-06 05:03:17,914] [pool-1-thread-3] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-12-06 05:03:27,583] [pool-1-thread-1] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-12-06 05:03:30,150] [pool-1-thread-11] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-12-06 05:03:54,167] [pool-1-thread-8] Initializing /data/converted/michel/a.tif: [testng] [2024-12-06 05:04:04,662] [pool-1-thread-3] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-12-06 05:04:34,878] [pool-1-thread-1] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-12-06 05:04:38,019] [pool-1-thread-8] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-12-06 05:04:43,474] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-12-06 05:05:00,583] [pool-1-thread-6] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-12-06 05:05:02,899] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-12-06 05:05:13,906] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-12-06 05:05:42,830] [pool-1-thread-4] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-12-06 05:05:54,881] [pool-1-thread-6] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-12-06 05:06:47,512] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-12-06 05:06:50,429] [pool-1-thread-6] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-12-06 05:07:31,078] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-12-06 05:09:20,851] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-12-06 05:10:29,648] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-12-06 05:16:53,062] [pool-1-thread-6] Initializing /data/converted/michel/b.tif: [testng] [2024-12-06 05:17:03,777] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-12-06 05:17:49,032] [pool-1-thread-6] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] 05:18:09,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:18:09,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:18:09,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_05-18-09.log] [testng] 05:18:09,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17e342f3 - End of configuration. [testng] [2024-12-06 05:18:25,042] [pool-1-thread-8] Initializing /data/converted/michel/d.tif: [testng] [2024-12-06 05:18:38,137] [pool-1-thread-11] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-12-06 05:18:49,927] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-12-06 05:19:11,055] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-12-06 05:19:23,856] [pool-1-thread-11] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-12-06 05:19:37,164] [pool-1-thread-11] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-12-06 05:20:01,479] [pool-1-thread-5] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-12-06 05:20:11,470] [pool-1-thread-9] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-12-06 05:20:16,187] [pool-1-thread-8] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-12-06 05:20:31,077] [pool-1-thread-4] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-12-06 05:20:50,276] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-12-06 05:21:17,201] [pool-1-thread-1] Initializing /data/scott/Slide133-08.tif: [testng] [2024-12-06 05:21:30,856] [pool-1-thread-2] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-12-06 05:22:04,918] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-12-06 05:22:38,794] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-12-06 05:22:53,338] [pool-1-thread-1] Initializing /data/converted/lior/live+cf5b.tif: [testng] 06:20:29,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:20:29,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:29,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_06-20-29.log] [testng] 06:20:29,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4232cfd2 - End of configuration. [testng] 06:25:11,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:25:11,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:25:11,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_06-25-11.log] [testng] 06:25:11,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79059313 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 158 minutes 16 seconds Finished: SUCCESS