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Started by upstream project "BIOFORMATS-test-repo" build number 281 originally caused by: Started by upstream project "Trigger" build number 301 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins2276095501048129530.sh + '[' psd = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44406_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:09:35,459 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:09:35,460 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:09:35,460 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:09:35,461 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:09:35,461 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:09:35,461 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:09:35,462 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:09:35,462 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:09:35,462 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:09:35,462 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:09:35,463 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:09:35,463 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:09:35,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:09:35,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:09:35,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:09:35,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:09:35,703 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:09:35,703 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:09:35,703 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:09:35,704 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:09:35,704 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:09:35,704 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:09:35,705 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-06 04:09:35,714] [main] java.version = 1.8.0_342 [testng] 04:09:35,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:09:35,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:35,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_04-09-35.log] [testng] 04:09:35,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-06 04:09:35,762] [main] testng.directory = /data [testng] [2024-12-06 04:09:35,762] [main] testng.configDirectory = /config [testng] [2024-12-06 04:09:35,774] [main] testng.multiplier = 1.0 [testng] [2024-12-06 04:09:35,775] [main] testng.in-memory = false [testng] [2024-12-06 04:09:35,775] [main] testng.allow-missing = false [testng] [2024-12-06 04:09:35,775] [main] user.language = en [testng] [2024-12-06 04:09:35,775] [main] user.country = ${user.country} [testng] [2024-12-06 04:09:35,775] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-06 04:09:36,930] [main] ---------------------------------------- [testng] [2024-12-06 04:09:36,930] [main] Total files: 18 [testng] [2024-12-06 04:09:36,931] [main] Scan time: 1.155 s (64 ms/file) [testng] [2024-12-06 04:09:36,931] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-06 04:09:52,274] [pool-1-thread-1] Initializing /data/ascb/423.psd: [testng] 04:09:52,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:09:52,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:52,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_04-09-52.log] [testng] 04:09:52,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@516de83 - End of configuration. [testng] [2024-12-06 04:09:53,222] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 04:09:53,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:09:53,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:53,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_04-09-53.log] [testng] 04:09:53,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@690374ac - End of configuration. [testng] [2024-12-06 04:09:54,367] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 04:09:54,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:09:54,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:54,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_04-09-54.log] [testng] 04:09:54,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f9e7cf9 - End of configuration. [testng] [2024-12-06 04:09:55,585] [pool-1-thread-10] Initializing /data/big-images/8kx8k.psd: [testng] 04:09:55,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:09:55,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:55,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_04-09-55.log] [testng] 04:09:55,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56f65fc7 - End of configuration. [testng] [2024-12-06 04:09:56,228] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 04:09:56,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:09:56,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:56,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_04-09-56.log] [testng] 04:09:56,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b239169 - End of configuration. [testng] [2024-12-06 04:09:57,155] [pool-1-thread-8] Initializing /data/misc/glossy_buttons.psd: [testng] 04:09:57,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:09:57,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:57,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_04-09-57.log] [testng] 04:09:57,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fb335d1 - End of configuration. [testng] [2024-12-06 04:09:57,767] [pool-1-thread-7] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 04:09:57,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:09:57,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:57,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_04-09-57.log] [testng] 04:09:57,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fa92f05 - End of configuration. [testng] [2024-12-06 04:09:58,258] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd: [testng] 04:09:58,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:09:58,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:58,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_04-09-58.log] [testng] 04:09:58,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67e296bc - End of configuration. [testng] [2024-12-06 04:09:58,700] [pool-1-thread-5] Initializing /data/misc/smilie.psd: [testng] 04:09:58,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:09:58,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:58,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_04-09-58.log] [testng] 04:09:58,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1585cf6f - End of configuration. [testng] [2024-12-06 04:09:59,277] [pool-1-thread-4] Initializing /data/misc/venus_composite_8bit.psd: [testng] 04:09:59,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:09:59,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:59,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_04-09-59.log] [testng] 04:09:59,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5367d4f2 - End of configuration. [testng] [2024-12-06 04:10:00,234] [pool-1-thread-3] Initializing /data/ascb/607x.psd: [testng] 04:10:00,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:10:00,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:10:00,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_04-10-00.log] [testng] 04:10:00,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2796d2d0 - End of configuration. [testng] [2024-12-06 04:10:00,697] [pool-1-thread-2] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 04:10:00,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:10:00,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:10:00,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_04-10-00.log] [testng] 04:10:00,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d80dd3 - End of configuration. [testng] [2024-12-06 04:10:07,145] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] [2024-12-06 04:10:08,354] [pool-1-thread-7] Initializing /data/cris/house.tif: [testng] [2024-12-06 04:10:11,357] [pool-1-thread-5] Initializing /data/misc/venus_composite.psd: [testng] [2024-12-06 04:10:12,410] [pool-1-thread-8] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-12-06 04:10:13,833] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd: [testng] [2024-12-06 04:10:14,679] [pool-1-thread-11] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 55 seconds Finished: SUCCESS