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Started by upstream project "BIOFORMATS-test-repo" build number 282 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins2076731551826790269.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44440_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 10:10:58,908 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 10:10:58,910 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 10:10:58,910 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:10:58,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:10:58,911 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:10:58,911 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:10:58,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:10:58,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:10:58,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:10:58,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:10:58,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:10:58,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:10:59,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:10:59,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:10:59,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:10:59,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:10:59,202 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:10:59,202 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:10:59,202 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:10:59,203 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:10:59,203 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 10:10:59,204 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 10:10:59,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 292 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-06 10:10:59,214] [main] java.version = 1.8.0_342 [testng] 10:10:59,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:10:59,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:10:59,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_10-10-59.log] [testng] 10:10:59,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-06 10:10:59,270] [main] testng.directory = /data [testng] [2024-12-06 10:10:59,270] [main] testng.configDirectory = /config [testng] [2024-12-06 10:10:59,282] [main] testng.multiplier = 1.0 [testng] [2024-12-06 10:10:59,282] [main] testng.in-memory = false [testng] [2024-12-06 10:10:59,283] [main] testng.allow-missing = false [testng] [2024-12-06 10:10:59,283] [main] user.language = en [testng] [2024-12-06 10:10:59,283] [main] user.country = ${user.country} [testng] [2024-12-06 10:10:59,283] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-06 10:11:03,775] [main] ---------------------------------------- [testng] [2024-12-06 10:11:03,775] [main] Total files: 103 [testng] [2024-12-06 10:11:03,775] [main] Scan time: 4.491 s (43 ms/file) [testng] [2024-12-06 10:11:03,775] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-06 10:11:14,183] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] 10:11:14,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:11:14,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:14,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_10-11-14.log] [testng] 10:11:14,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d6e0a75 - End of configuration. [testng] [2024-12-06 10:11:14,216] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] 10:11:14,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:11:14,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:14,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_10-11-14.log] [testng] 10:11:14,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fa098ef - End of configuration. [testng] [2024-12-06 10:11:14,244] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] 10:11:14,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:11:14,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:14,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_10-11-14.log] [testng] 10:11:14,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3299781a - End of configuration. [testng] [2024-12-06 10:11:14,280] [pool-1-thread-10] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] 10:11:14,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:11:14,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:14,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_10-11-14.log] [testng] 10:11:14,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f99ffa4 - End of configuration. [testng] [2024-12-06 10:11:14,406] [pool-1-thread-9] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] 10:11:14,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:11:14,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:14,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_10-11-14.log] [testng] 10:11:14,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4564587d - End of configuration. [testng] [2024-12-06 10:11:14,446] [pool-1-thread-8] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] 10:11:14,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:11:14,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:14,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_10-11-14.log] [testng] 10:11:14,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36db0ffe - End of configuration. [testng] [2024-12-06 10:11:14,766] [pool-1-thread-7] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] 10:11:14,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:11:14,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:14,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_10-11-14.log] [testng] 10:11:14,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@155a8e81 - End of configuration. [testng] [2024-12-06 10:11:14,787] [pool-1-thread-6] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] 10:11:14,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:11:14,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:14,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_10-11-14.log] [testng] 10:11:14,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dcb11ec - End of configuration. [testng] [2024-12-06 10:11:14,816] [pool-1-thread-5] Initializing /data/jay/Carbon.34.dm3: [testng] 10:11:14,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:11:14,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:14,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_10-11-14.log] [testng] 10:11:14,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8e487ea - End of configuration. [testng] [2024-12-06 10:11:14,838] [pool-1-thread-4] Initializing /data/jay/dnasample1.dm3: [testng] 10:11:14,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:11:14,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:14,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_10-11-14.log] [testng] 10:11:14,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34339ac6 - End of configuration. [testng] [2024-12-06 10:11:14,865] [pool-1-thread-3] Initializing /data/jay/camtest1.dm3: [testng] 10:11:14,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:11:14,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:14,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_10-11-14.log] [testng] 10:11:14,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4592d025 - End of configuration. [testng] [2024-12-06 10:11:14,899] [pool-1-thread-2] Initializing /data/jay/ViewDMtest.dm3: [testng] 10:11:14,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:11:14,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:14,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_10-11-14.log] [testng] 10:11:14,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62c54ccc - End of configuration. [testng] [2024-12-06 10:11:17,410] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-12-06 10:11:17,827] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-12-06 10:11:17,962] [pool-1-thread-10] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-12-06 10:11:18,558] [pool-1-thread-7] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-12-06 10:11:19,323] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-12-06 10:11:19,364] [pool-1-thread-12] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-12-06 10:11:19,673] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-12-06 10:11:21,390] [pool-1-thread-6] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-12-06 10:11:21,531] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-12-06 10:11:21,943] [pool-1-thread-2] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-12-06 10:11:22,021] [pool-1-thread-3] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-12-06 10:11:22,068] [pool-1-thread-4] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-12-06 10:11:22,968] [pool-1-thread-9] Initializing /data/ofra/lowloss.dm3: [testng] [2024-12-06 10:11:23,046] [pool-1-thread-11] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-12-06 10:11:23,803] [pool-1-thread-2] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-12-06 10:11:23,965] [pool-1-thread-3] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-12-06 10:11:24,057] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-12-06 10:11:24,264] [pool-1-thread-7] Initializing /data/jay/DMtest2.dm3: [testng] [2024-12-06 10:11:24,677] [pool-1-thread-9] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-12-06 10:11:25,650] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2024-12-06 10:11:25,749] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-12-06 10:11:26,121] [pool-1-thread-12] Initializing /data/qa-7642/8.dm4: [testng] [2024-12-06 10:11:26,202] [pool-1-thread-3] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-12-06 10:11:26,821] [pool-1-thread-10] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-12-06 10:11:28,022] [pool-1-thread-6] Initializing /data/melissa/annotation-test.tif: [testng] [2024-12-06 10:11:28,774] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-12-06 10:11:28,998] [pool-1-thread-4] Initializing /data/qa-21761/example.dm4: [testng] [2024-12-06 10:11:29,117] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-12-06 10:11:29,304] [pool-1-thread-12] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-12-06 10:11:29,524] [pool-1-thread-7] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-12-06 10:11:30,824] [pool-1-thread-5] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-12-06 10:11:31,658] [pool-1-thread-4] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-12-06 10:11:32,632] [pool-1-thread-3] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-12-06 10:11:33,311] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-12-06 10:11:33,994] [pool-1-thread-10] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-12-06 10:11:34,999] [pool-1-thread-6] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-12-06 10:11:35,533] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-12-06 10:11:35,875] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-12-06 10:11:36,800] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-12-06 10:11:37,172] [pool-1-thread-7] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-12-06 10:11:38,439] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-12-06 10:11:38,532] [pool-1-thread-1] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-12-06 10:11:38,766] [pool-1-thread-2] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-12-06 10:11:38,913] [pool-1-thread-4] Initializing /data/jay/smallerfile.dm3: [testng] [2024-12-06 10:11:39,147] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-12-06 10:11:39,731] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-12-06 10:11:40,304] [pool-1-thread-8] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-12-06 10:11:40,779] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-12-06 10:11:41,340] [pool-1-thread-9] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-12-06 10:11:42,075] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-12-06 10:11:42,491] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-12-06 10:11:42,754] [pool-1-thread-6] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-12-06 10:11:43,369] [pool-1-thread-3] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-12-06 10:11:43,578] [pool-1-thread-2] Initializing /data/samples/test-tiles.dm3: [testng] [2024-12-06 10:11:44,174] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-12-06 10:11:44,261] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2024-12-06 10:11:45,302] [pool-1-thread-2] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-12-06 10:11:46,029] [pool-1-thread-3] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-12-06 10:11:47,486] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-12-06 10:11:47,605] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-12-06 10:11:48,117] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-12-06 10:11:49,169] [pool-1-thread-7] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-12-06 10:11:49,622] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-12-06 10:11:50,237] [pool-1-thread-11] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-12-06 10:11:50,653] [pool-1-thread-12] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-12-06 10:11:50,770] [pool-1-thread-5] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-12-06 10:11:51,000] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-12-06 10:11:52,487] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-12-06 10:11:52,663] [pool-1-thread-11] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-12-06 10:11:53,165] [pool-1-thread-3] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-12-06 10:11:53,673] [pool-1-thread-6] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-12-06 10:11:53,850] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-12-06 10:11:54,568] [pool-1-thread-1] Initializing /data/jay/DMtest.dm3: [testng] [2024-12-06 10:11:54,986] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-12-06 10:11:55,829] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-12-06 10:11:56,290] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-12-06 10:11:56,460] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-12-06 10:11:56,554] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2024-12-06 10:11:57,776] [pool-1-thread-6] Initializing /data/jay/dnasample.tif: [testng] [2024-12-06 10:11:58,822] [pool-1-thread-7] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-12-06 10:11:59,329] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-12-06 10:11:59,420] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-12-06 10:11:59,660] [pool-1-thread-5] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-12-06 10:12:00,503] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2024-12-06 10:12:01,614] [pool-1-thread-10] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-12-06 10:12:01,808] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 20 seconds Finished: SUCCESS