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Started by upstream project "BIOFORMATS-test-repo" build number 282 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins13772983573885654969.sh + '[' lim = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44452_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 10:11:23,892 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 10:11:23,894 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 10:11:23,894 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:11:23,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:11:23,896 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:11:23,896 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:11:23,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:11:23,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:11:23,897 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:11:23,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:11:23,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:11:23,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:11:24,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:11:24,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:11:24,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:11:24,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:11:24,184 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:11:24,184 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:11:24,184 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:11:24,184 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:11:24,185 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 10:11:24,185 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 10:11:24,186 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 288 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-06 10:11:24,196] [main] java.version = 1.8.0_342 [testng] 10:11:24,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:11:24,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:24,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_10-11-24.log] [testng] 10:11:24,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-06 10:11:24,252] [main] testng.directory = /data [testng] [2024-12-06 10:11:24,252] [main] testng.configDirectory = /config [testng] [2024-12-06 10:11:24,265] [main] testng.multiplier = 1.0 [testng] [2024-12-06 10:11:24,265] [main] testng.in-memory = false [testng] [2024-12-06 10:11:24,265] [main] testng.allow-missing = false [testng] [2024-12-06 10:11:24,265] [main] user.language = en [testng] [2024-12-06 10:11:24,265] [main] user.country = ${user.country} [testng] [2024-12-06 10:11:24,265] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-06 10:11:24,936] [main] ---------------------------------------- [testng] [2024-12-06 10:11:24,937] [main] Total files: 21 [testng] [2024-12-06 10:11:24,937] [main] Scan time: 0.671 s (31 ms/file) [testng] [2024-12-06 10:11:24,937] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-06 10:11:28,728] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim: [testng] 10:11:28,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:11:28,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:28,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_10-11-28.log] [testng] 10:11:28,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@461edf16 - End of configuration. [testng] [2024-12-06 10:11:28,878] [pool-1-thread-12] Initializing /data/venu/Kontrolle0016.lim: [testng] 10:11:28,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:11:28,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:28,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_10-11-28.log] [testng] 10:11:28,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63e81c6c - End of configuration. [testng] [2024-12-06 10:11:29,061] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 10:11:29,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:11:29,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:29,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_10-11-29.log] [testng] 10:11:29,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66549e - End of configuration. [testng] [2024-12-06 10:11:29,236] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim: [testng] 10:11:29,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:11:29,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:29,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_10-11-29.log] [testng] 10:11:29,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22578fc5 - End of configuration. [testng] [2024-12-06 10:11:29,400] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim: [testng] 10:11:29,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:11:29,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:29,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_10-11-29.log] [testng] 10:11:29,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@178b8206 - End of configuration. [testng] [2024-12-06 10:11:29,648] [pool-1-thread-8] Initializing /data/venu/Kontrolle0018.lim: [testng] 10:11:29,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:11:29,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:29,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_10-11-29.log] [testng] 10:11:29,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b09c124 - End of configuration. [testng] [2024-12-06 10:11:29,769] [pool-1-thread-7] Initializing /data/venu/Kontrolle0009.lim: [testng] 10:11:29,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:11:29,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:29,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_10-11-29.log] [testng] 10:11:29,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d2419e - End of configuration. [testng] [2024-12-06 10:11:29,858] [pool-1-thread-6] Initializing /data/venu/Kontrolle0008.lim: [testng] 10:11:29,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:11:29,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:29,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_10-11-29.log] [testng] 10:11:29,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21eb1aa3 - End of configuration. [testng] [2024-12-06 10:11:29,924] [pool-1-thread-5] Initializing /data/venu/Kontrolle0005.lim: [testng] 10:11:29,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:11:29,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:29,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_10-11-29.log] [testng] 10:11:29,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46777794 - End of configuration. [testng] [2024-12-06 10:11:30,014] [pool-1-thread-4] Initializing /data/venu/Kontrolle0004.lim: [testng] 10:11:30,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:11:30,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:30,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_10-11-30.log] [testng] 10:11:30,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b9039e0 - End of configuration. [testng] [2024-12-06 10:11:30,162] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim: [testng] 10:11:30,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:11:30,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:30,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_10-11-30.log] [testng] 10:11:30,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@779f408e - End of configuration. [testng] [2024-12-06 10:11:30,233] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim: [testng] 10:11:30,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:11:30,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:30,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_10-11-30.log] [testng] 10:11:30,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47a9500a - End of configuration. [testng] [2024-12-06 10:11:35,154] [pool-1-thread-1] Initializing /data/venu/Kontrolle0020.lim: [testng] [2024-12-06 10:11:35,280] [pool-1-thread-6] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-12-06 10:11:35,407] [pool-1-thread-2] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-12-06 10:11:35,547] [pool-1-thread-10] Initializing /data/venu/Kontrolle0021.lim: [testng] [2024-12-06 10:11:35,697] [pool-1-thread-11] Initializing /data/venu/Kontrolle0017.lim: [testng] [2024-12-06 10:11:35,857] [pool-1-thread-7] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-12-06 10:11:36,026] [pool-1-thread-9] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-12-06 10:11:36,202] [pool-1-thread-5] Initializing /data/venu/Kontrolle0012.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 17 seconds Finished: SUCCESS