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Started by upstream project "BIOFORMATS-test-repo" build number 282 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins237273426454178240.sh + '[' fei = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44465_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 10:19:13,778 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 10:19:13,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 10:19:13,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:19:13,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:19:13,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:19:13,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:19:13,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:19:13,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:19:13,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:19:13,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:19:13,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:19:13,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:19:14,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:19:14,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:19:14,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:19:14,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:19:14,079 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:19:14,080 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:19:14,080 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:19:14,080 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:19:14,080 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 10:19:14,081 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 10:19:14,081 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 299 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-06 10:19:14,092] [main] java.version = 1.8.0_342 [testng] 10:19:14,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:19:14,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:14,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_10-19-14.log] [testng] 10:19:14,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-06 10:19:14,149] [main] testng.directory = /data [testng] [2024-12-06 10:19:14,149] [main] testng.configDirectory = /config [testng] [2024-12-06 10:19:14,163] [main] testng.multiplier = 1.0 [testng] [2024-12-06 10:19:14,163] [main] testng.in-memory = false [testng] [2024-12-06 10:19:14,163] [main] testng.allow-missing = false [testng] [2024-12-06 10:19:14,163] [main] user.language = en [testng] [2024-12-06 10:19:14,163] [main] user.country = ${user.country} [testng] [2024-12-06 10:19:14,163] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-06 10:19:20,463] [main] ---------------------------------------- [testng] [2024-12-06 10:19:20,463] [main] Total files: 21 [testng] [2024-12-06 10:19:20,463] [main] Scan time: 6.3 s (300 ms/file) [testng] [2024-12-06 10:19:20,464] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-06 10:19:38,858] [pool-1-thread-1] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] 10:19:38,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:19:38,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:38,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_10-19-38.log] [testng] 10:19:38,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72da38e1 - End of configuration. [testng] [2024-12-06 10:19:39,801] [pool-1-thread-12] Initializing /data/venu/VENU_Seven.TIF: [testng] 10:19:39,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:19:39,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:39,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_10-19-39.log] [testng] 10:19:39,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f6dfae - End of configuration. [testng] [2024-12-06 10:19:40,758] [pool-1-thread-11] Initializing /data/venu/VENU_Four.TIF: [testng] 10:19:40,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:19:40,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:40,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_10-19-40.log] [testng] 10:19:40,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64e6936 - End of configuration. [testng] [2024-12-06 10:19:41,671] [pool-1-thread-10] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] 10:19:41,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:19:41,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:41,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_10-19-41.log] [testng] 10:19:41,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@175512db - End of configuration. [testng] [2024-12-06 10:19:42,489] [pool-1-thread-9] Initializing /data/venu/VENU03.IMG: [testng] 10:19:42,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:19:42,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:42,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_10-19-42.log] [testng] 10:19:42,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4676b171 - End of configuration. [testng] [2024-12-06 10:19:42,755] [pool-1-thread-8] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] 10:19:42,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:19:42,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:42,756 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_10-19-42.log] [testng] 10:19:42,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b83ec7a - End of configuration. [testng] [2024-12-06 10:19:43,770] [pool-1-thread-7] Initializing /data/venu/VENU01.IMG: [testng] 10:19:43,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:19:43,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:43,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_10-19-43.log] [testng] 10:19:43,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c8499af - End of configuration. [testng] [2024-12-06 10:19:44,059] [pool-1-thread-6] Initializing /data/venu/VENU_Six.TIF: [testng] 10:19:44,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:19:44,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:44,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_10-19-44.log] [testng] 10:19:44,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9659839 - End of configuration. [testng] [2024-12-06 10:19:44,973] [pool-1-thread-5] Initializing /data/venu/VENU02.TIF: [testng] 10:19:44,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:19:44,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:44,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_10-19-44.log] [testng] 10:19:44,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d63c5ea - End of configuration. [testng] [2024-12-06 10:19:45,975] [pool-1-thread-4] Initializing /data/steffen/Batman_008.tif: [testng] 10:19:45,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:19:45,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:45,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_10-19-45.log] [testng] 10:19:45,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6089ed50 - End of configuration. [testng] [2024-12-06 10:19:47,085] [pool-1-thread-3] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 10:19:47,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:19:47,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:47,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_10-19-47.log] [testng] 10:19:47,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5585e0a3 - End of configuration. [testng] [2024-12-06 10:19:48,200] [pool-1-thread-2] Initializing /data/venu/VENU_Five.TIF: [testng] 10:19:48,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:19:48,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:19:48,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_10-19-48.log] [testng] 10:19:48,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a81e457 - End of configuration. [testng] [2024-12-06 10:19:54,144] [pool-1-thread-9] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] [2024-12-06 10:19:56,873] [pool-1-thread-7] Initializing /data/venu/VENU.TIF: [testng] [2024-12-06 10:20:04,498] [pool-1-thread-11] Initializing /data/venu/VENU_Eight.TIF: [testng] [2024-12-06 10:20:05,484] [pool-1-thread-4] Initializing /data/venu/VENU01.TIF: [testng] [2024-12-06 10:20:06,539] [pool-1-thread-2] Initializing /data/venu/VENU03.TIF: [testng] [2024-12-06 10:20:07,414] [pool-1-thread-10] Initializing /data/venu/VENU02.IMG: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 3 seconds Finished: SUCCESS