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Started by upstream project "BIOFORMATS-test-repo" build number 282 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins16128447048529268437.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44488_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 10:39:19,269 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 10:39:19,271 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 10:39:19,271 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:39:19,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:39:19,272 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:39:19,272 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:39:19,273 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:39:19,273 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:39:19,273 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:39:19,274 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:39:19,274 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:39:19,274 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:39:19,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:39:19,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:39:19,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:39:19,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:39:19,560 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:39:19,560 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:39:19,560 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:39:19,561 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:39:19,561 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 10:39:19,562 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 10:39:19,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-06 10:39:19,572] [main] java.version = 1.8.0_342 [testng] 10:39:19,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:39:19,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:19,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_10-39-19.log] [testng] 10:39:19,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-06 10:39:19,629] [main] testng.directory = /data [testng] [2024-12-06 10:39:19,629] [main] testng.configDirectory = /config [testng] [2024-12-06 10:39:19,642] [main] testng.multiplier = 1.0 [testng] [2024-12-06 10:39:19,642] [main] testng.in-memory = false [testng] [2024-12-06 10:39:19,643] [main] testng.allow-missing = false [testng] [2024-12-06 10:39:19,643] [main] user.language = en [testng] [2024-12-06 10:39:19,643] [main] user.country = ${user.country} [testng] [2024-12-06 10:39:19,643] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-06 10:39:20,348] [main] ---------------------------------------- [testng] [2024-12-06 10:39:20,348] [main] Total files: 25 [testng] [2024-12-06 10:39:20,348] [main] Scan time: 0.705 s (28 ms/file) [testng] [2024-12-06 10:39:20,349] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-06 10:39:30,715] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 10:39:30,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:39:30,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:30,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_10-39-30.log] [testng] 10:39:30,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@561f1758 - End of configuration. [testng] [2024-12-06 10:39:31,032] [pool-1-thread-12] Initializing /data/jqd/mire32.pict: [testng] 10:39:31,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:39:31,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:31,034 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_10-39-31.log] [testng] 10:39:31,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d297ecb - End of configuration. [testng] [2024-12-06 10:39:31,342] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 10:39:31,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:39:31,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:31,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_10-39-31.log] [testng] 10:39:31,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c7bd76c - End of configuration. [testng] [2024-12-06 10:39:31,614] [pool-1-thread-10] Initializing /data/misc/planet2.pict: [testng] 10:39:31,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:39:31,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:31,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_10-39-31.log] [testng] 10:39:31,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d2e63b0 - End of configuration. [testng] [2024-12-06 10:39:31,911] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 10:39:31,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:39:31,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:31,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_10-39-31.log] [testng] 10:39:31,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cc371ba - End of configuration. [testng] [2024-12-06 10:39:32,223] [pool-1-thread-8] Initializing /data/misc/planet.png: [testng] 10:39:32,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:39:32,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:32,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_10-39-32.log] [testng] 10:39:32,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79b054a - End of configuration. [testng] [2024-12-06 10:39:32,253] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] 10:39:32,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:39:32,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:32,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_10-39-32.log] [testng] 10:39:32,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18f73a37 - End of configuration. [testng] [2024-12-06 10:39:32,527] [pool-1-thread-6] Initializing /data/brian/images/RED.PCT: [testng] 10:39:32,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:39:32,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:32,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_10-39-32.log] [testng] 10:39:32,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5efb7803 - End of configuration. [testng] [2024-12-06 10:39:32,826] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32.pct: [testng] 10:39:32,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:39:32,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:32,827 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_10-39-32.log] [testng] 10:39:32,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd95b50 - End of configuration. [testng] [2024-12-06 10:39:33,120] [pool-1-thread-4] Initializing /data/misc/swlogo.pict: [testng] 10:39:33,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:39:33,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:33,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_10-39-33.log] [testng] 10:39:33,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38a61f29 - End of configuration. [testng] [2024-12-06 10:39:33,389] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 10:39:33,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:39:33,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:33,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_10-39-33.log] [testng] 10:39:33,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@417ec5cc - End of configuration. [testng] [2024-12-06 10:39:33,736] [pool-1-thread-2] Initializing /data/wayne/PotatoMeristem.pict: [testng] 10:39:33,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:39:33,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:39:33,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_10-39-33.log] [testng] 10:39:33,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69736721 - End of configuration. [testng] [2024-12-06 10:39:36,894] [pool-1-thread-8] Initializing /data/brian/images/BLK.PCT: [testng] [2024-12-06 10:39:39,966] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-12-06 10:39:40,425] [pool-1-thread-5] Initializing /data/brian/images/WHT.PCT: [testng] [2024-12-06 10:39:40,925] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-12-06 10:39:41,607] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT: [testng] [2024-12-06 10:39:42,034] [pool-1-thread-7] Initializing /data/jqd/mireSixteen.pict: [testng] [2024-12-06 10:39:42,521] [pool-1-thread-9] Initializing /data/brian/images/BLU.PCT: [testng] [2024-12-06 10:39:42,989] [pool-1-thread-6] Initializing /data/misc/planet.pict: [testng] [2024-12-06 10:39:43,437] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-12-06 10:39:43,893] [pool-1-thread-3] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-12-06 10:39:44,349] [pool-1-thread-1] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-12-06 10:39:44,790] [pool-1-thread-2] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-12-06 10:39:47,080] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 seconds Finished: SUCCESS