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Started by upstream project "BIOFORMATS-test-repo" build number 282 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins15001738413666041611.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44571_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:02:54,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:02:54,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:02:54,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:02:54,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:02:54,597 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:02:54,597 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:02:54,597 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:02:54,598 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:02:54,598 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 13:02:54,599 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 13:02:54,599 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 394 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-06 13:02:54,608] [main] java.version = 1.8.0_342 [testng] 13:02:54,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:02:54,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:02:54,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-06_13-02-54.log] [testng] 13:02:54,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-06 13:02:54,659] [main] testng.directory = /data [testng] [2024-12-06 13:02:54,660] [main] testng.configDirectory = /config [testng] [2024-12-06 13:02:54,672] [main] testng.multiplier = 1.0 [testng] [2024-12-06 13:02:54,672] [main] testng.in-memory = false [testng] [2024-12-06 13:02:54,672] [main] testng.allow-missing = false [testng] [2024-12-06 13:02:54,672] [main] user.language = en [testng] [2024-12-06 13:02:54,672] [main] user.country = ${user.country} [testng] [2024-12-06 13:02:54,672] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-06 13:02:59,204] [main] ---------------------------------------- [testng] [2024-12-06 13:02:59,205] [main] Total files: 32 [testng] [2024-12-06 13:02:59,205] [main] Scan time: 4.532 s (141 ms/file) [testng] [2024-12-06 13:02:59,205] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-06 13:03:32,619] [pool-1-thread-1] Initializing /data/geert/good example1.1sc.jpg: [testng] 13:03:32,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:03:32,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:32,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-06_13-03-32.log] [testng] 13:03:32,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b67db84 - End of configuration. [testng] [2024-12-06 13:03:32,808] [pool-1-thread-12] Initializing /data/geert/good example1.1sc: [testng] 13:03:32,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:03:32,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:32,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-06_13-03-32.log] [testng] 13:03:32,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289fd790 - End of configuration. [testng] [2024-12-06 13:03:33,427] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] 13:03:33,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:03:33,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:33,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-06_13-03-33.log] [testng] 13:03:33,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41310a8 - End of configuration. [testng] [2024-12-06 13:03:34,306] [pool-1-thread-10] Initializing /data/geert/bad example1.jpg: [testng] 13:03:34,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:03:34,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:34,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-06_13-03-34.log] [testng] 13:03:34,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4987df40 - End of configuration. [testng] [2024-12-06 13:03:34,585] [pool-1-thread-9] Initializing /data/qa-29469/bad2.1sc: [testng] 13:03:34,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:03:34,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:34,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-06_13-03-34.log] [testng] 13:03:34,587 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66998671 - End of configuration. [testng] [2024-12-06 13:03:35,317] [pool-1-thread-8] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] 13:03:35,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:03:35,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:35,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-06_13-03-35.log] [testng] 13:03:35,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@708c2d1e - End of configuration. [testng] [2024-12-06 13:03:37,460] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] 13:03:37,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:03:37,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:37,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-06_13-03-37.log] [testng] 13:03:37,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59b165b7 - End of configuration. [testng] [2024-12-06 13:03:38,021] [pool-1-thread-6] Initializing /data/keith/test2.1sc: [testng] 13:03:38,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:03:38,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:38,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-06_13-03-38.log] [testng] 13:03:38,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64fceb9 - End of configuration. [testng] [2024-12-06 13:03:38,516] [pool-1-thread-5] Initializing /data/keith/test.1sc: [testng] 13:03:38,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:03:38,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:38,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-06_13-03-38.log] [testng] 13:03:38,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50355f40 - End of configuration. [testng] [2024-12-06 13:03:39,072] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] 13:03:39,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:03:39,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:39,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-06_13-03-39.log] [testng] 13:03:39,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39663161 - End of configuration. [testng] [2024-12-06 13:03:41,440] [pool-1-thread-3] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] 13:03:41,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:03:41,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:41,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-06_13-03-41.log] [testng] 13:03:41,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62df3c9c - End of configuration. [testng] [2024-12-06 13:03:42,006] [pool-1-thread-2] Initializing /data/keith/pg020410saur3.1sc: [testng] 13:03:42,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:03:42,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:42,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-06_13-03-42.log] [testng] 13:03:42,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58977d27 - End of configuration. [testng] [2024-12-06 13:03:49,592] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2024-12-06 13:03:51,706] [pool-1-thread-10] Initializing /data/qa-29459/bad.1sc: [testng] [2024-12-06 13:03:52,457] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2024-12-06 13:03:53,295] [pool-1-thread-12] Initializing /data/qa-29469/good.1sc: [testng] [2024-12-06 13:03:53,940] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-12-06 13:03:54,536] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2024-12-06 13:03:56,715] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2024-12-06 13:03:59,036] [pool-1-thread-2] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2024-12-06 13:03:59,773] [pool-1-thread-5] Initializing /data/adrian/test_img.1sc: [testng] [2024-12-06 13:04:00,515] [pool-1-thread-11] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [2024-12-06 13:04:06,834] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-12-06 13:04:07,581] [pool-1-thread-2] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2024-12-06 13:04:07,839] [pool-1-thread-8] Initializing /data/samples/imagesEight.1sc: [testng] [2024-12-06 13:04:08,458] [pool-1-thread-10] Initializing /data/qa-29459/bad.jpg: [testng] [2024-12-06 13:04:08,659] [pool-1-thread-12] Initializing /data/samples/Criterion.1sc: [testng] [2024-12-06 13:04:09,356] [pool-1-thread-4] Initializing /data/geert/bad example1.1sc: [testng] [2024-12-06 13:04:10,117] [pool-1-thread-9] Initializing /data/david/Opened in imageJ.tiff: [testng] [2024-12-06 13:04:12,305] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-12-06 13:04:14,943] [pool-1-thread-5] Initializing /data/qa-29469/bad3.1sc: [testng] [2024-12-06 13:04:21,050] [pool-1-thread-8] Initializing /data/keith/PF020328saur v3.1sc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 39 seconds Finished: SUCCESS