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Started by upstream project "BIOFORMATS-test-repo" build number 285 originally caused by: Started by upstream project "Trigger" build number 304 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins15096600221526064492.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_44945_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:24:51,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:24:51,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:24:51,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:51,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:51,636 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:24:51,636 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:24:51,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:24:51,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:51,637 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:51,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:24:51,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:24:51,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:24:51,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:24:51,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:24:51,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:24:51,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:24:51,915 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:24:51,915 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:24:51,915 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:24:51,916 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:24:51,916 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:24:51,917 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:24:51,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 281 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-09 00:24:51,928] [main] java.version = 1.8.0_342 [testng] 00:24:51,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:24:51,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:51,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-09_00-24-51.log] [testng] 00:24:51,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-09 00:24:51,982] [main] testng.directory = /data [testng] [2024-12-09 00:24:51,983] [main] testng.configDirectory = /config [testng] [2024-12-09 00:24:51,995] [main] testng.multiplier = 1.0 [testng] [2024-12-09 00:24:51,995] [main] testng.in-memory = false [testng] [2024-12-09 00:24:51,995] [main] testng.allow-missing = false [testng] [2024-12-09 00:24:51,995] [main] user.language = fr [testng] [2024-12-09 00:24:51,996] [main] user.country = FR [testng] [2024-12-09 00:24:51,996] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-09 00:25:11,932] [main] ---------------------------------------- [testng] [2024-12-09 00:25:11,932] [main] Total files: 21 [testng] [2024-12-09 00:25:11,932] [main] Scan time: 19.936 s (949 ms/file) [testng] [2024-12-09 00:25:11,932] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-09 00:25:51,512] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt: [testng] 00:25:51,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:25:51,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:51,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-09_00-25-51.log] [testng] 00:25:51,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54969de - End of configuration. [testng] [2024-12-09 00:25:52,858] [pool-1-thread-12] Initializing /data/stefan/001_q18.txt: [testng] 00:25:52,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:25:52,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:52,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-09_00-25-52.log] [testng] 00:25:52,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24704f0 - End of configuration. [testng] [2024-12-09 00:25:53,892] [pool-1-thread-11] Initializing /data/stefan/001_q13.txt: [testng] 00:25:53,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:25:53,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:53,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-09_00-25-53.log] [testng] 00:25:53,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@308b906f - End of configuration. [testng] [2024-12-09 00:25:54,922] [pool-1-thread-10] Initializing /data/stefan/001_q11.txt: [testng] 00:25:54,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:25:54,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:54,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-09_00-25-54.log] [testng] 00:25:54,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d0b6481 - End of configuration. [testng] [2024-12-09 00:25:57,382] [pool-1-thread-9] Initializing /data/stefan/001_q04.txt: [testng] 00:25:57,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:25:57,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:57,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-09_00-25-57.log] [testng] 00:25:57,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e21f9fa - End of configuration. [testng] [2024-12-09 00:25:58,335] [pool-1-thread-8] Initializing /data/stefan/001_q09.txt: [testng] 00:25:58,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:25:58,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:58,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-09_00-25-58.log] [testng] 00:25:58,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@475e01 - End of configuration. [testng] [2024-12-09 00:26:01,853] [pool-1-thread-7] Initializing /data/stefan/001_q06.txt: [testng] 00:26:01,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:26:01,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:01,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-09_00-26-01.log] [testng] 00:26:01,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@161c0da8 - End of configuration. [testng] [2024-12-09 00:26:03,996] [pool-1-thread-6] Initializing /data/stefan/001_q01.txt: [testng] 00:26:03,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:26:03,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:03,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-09_00-26-03.log] [testng] 00:26:03,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51b8e774 - End of configuration. [testng] [2024-12-09 00:26:06,080] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt: [testng] 00:26:06,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:26:06,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:06,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-09_00-26-06.log] [testng] 00:26:06,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@372dd5e2 - End of configuration. [testng] [2024-12-09 00:26:08,259] [pool-1-thread-4] Initializing /data/stefan/001_q10.txt: [testng] 00:26:08,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:26:08,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:08,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-09_00-26-08.log] [testng] 00:26:08,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bcc9e1 - End of configuration. [testng] [2024-12-09 00:26:11,165] [pool-1-thread-3] Initializing /data/stefan/001_q17.txt: [testng] 00:26:11,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:26:11,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:11,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-09_00-26-11.log] [testng] 00:26:11,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@593406b3 - End of configuration. [testng] [2024-12-09 00:26:12,577] [pool-1-thread-2] Initializing /data/stefan/001_q16.txt: [testng] 00:26:12,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:26:12,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:12,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-09_00-26-12.log] [testng] 00:26:12,578 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d189e47 - End of configuration. [testng] [2024-12-09 00:26:36,541] [pool-1-thread-6] Initializing /data/stefan/001_q02.txt: [testng] [2024-12-09 00:26:39,168] [pool-1-thread-9] Initializing /data/stefan/001_q05.txt: [testng] [2024-12-09 00:26:40,697] [pool-1-thread-2] Initializing /data/stefan/001_q03.txt: [testng] [2024-12-09 00:26:42,364] [pool-1-thread-11] Initializing /data/stefan/001_q08.txt: [testng] [2024-12-09 00:26:44,540] [pool-1-thread-1] Initializing /data/stefan/001_q07.txt: [testng] [2024-12-09 00:26:46,493] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 25 seconds Finished: SUCCESS