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Started by upstream project "BIOFORMATS-test-repo" build number 285 originally caused by: Started by upstream project "Trigger" build number 304 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins1065205920050024607.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_44954_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:30:35,778 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:30:35,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:30:35,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:35,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:35,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:30:35,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:30:35,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:30:35,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:35,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:35,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:30:35,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:30:35,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:30:36,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:30:36,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:30:36,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:30:36,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:30:36,081 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:30:36,081 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:30:36,081 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:30:36,082 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:30:36,082 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:30:36,083 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:30:36,083 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 301 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-09 00:30:36,092] [main] java.version = 1.8.0_342 [testng] 00:30:36,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:30:36,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:36,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-09_00-30-36.log] [testng] 00:30:36,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-09 00:30:36,144] [main] testng.directory = /data [testng] [2024-12-09 00:30:36,144] [main] testng.configDirectory = /config [testng] [2024-12-09 00:30:36,156] [main] testng.multiplier = 1.0 [testng] [2024-12-09 00:30:36,156] [main] testng.in-memory = false [testng] [2024-12-09 00:30:36,157] [main] testng.allow-missing = false [testng] [2024-12-09 00:30:36,157] [main] user.language = fr [testng] [2024-12-09 00:30:36,157] [main] user.country = FR [testng] [2024-12-09 00:30:36,157] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-09 00:30:37,162] [main] ---------------------------------------- [testng] [2024-12-09 00:30:37,162] [main] Total files: 31 [testng] [2024-12-09 00:30:37,162] [main] Scan time: 1.005 s (32 ms/file) [testng] [2024-12-09 00:30:37,162] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-09 00:30:41,409] [pool-1-thread-1] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] 00:30:41,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:30:41,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:41,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-09_00-30-41.log] [testng] 00:30:41,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a16c8d8 - End of configuration. [testng] [2024-12-09 00:30:41,484] [pool-1-thread-12] Initializing /data/brian/images/raw_a_rg.tiff: [testng] 00:30:41,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:30:41,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:41,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-09_00-30-41.log] [testng] 00:30:41,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1808ef3d - End of configuration. [testng] [2024-12-09 00:30:42,202] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] 00:30:42,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:30:42,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:42,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-09_00-30-42.log] [testng] 00:30:42,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62d31047 - End of configuration. [testng] [2024-12-09 00:30:42,264] [pool-1-thread-10] Initializing /data/stephane/holo0908.bmp: [testng] 00:30:42,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:30:42,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:42,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-09_00-30-42.log] [testng] 00:30:42,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b6d84ce - End of configuration. [testng] [2024-12-09 00:30:42,335] [pool-1-thread-9] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 00:30:42,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:30:42,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:42,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-09_00-30-42.log] [testng] 00:30:42,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75fdbc40 - End of configuration. [testng] [2024-12-09 00:30:42,401] [pool-1-thread-8] Initializing /data/big-images/6kx6k-grey.bmp: [testng] 00:30:42,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:30:42,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:42,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-09_00-30-42.log] [testng] 00:30:42,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4aacd6c7 - End of configuration. [testng] [2024-12-09 00:30:42,580] [pool-1-thread-7] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] 00:30:42,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:30:42,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:42,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-09_00-30-42.log] [testng] 00:30:42,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f962faf - End of configuration. [testng] [2024-12-09 00:30:42,650] [pool-1-thread-6] Initializing /data/bk/ch_00.bmp: [testng] 00:30:42,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:30:42,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:42,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-09_00-30-42.log] [testng] 00:30:42,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@585baae7 - End of configuration. [testng] [2024-12-09 00:30:42,733] [pool-1-thread-5] Initializing /data/curtis/image2.bmp: [testng] 00:30:42,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:30:42,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:42,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-09_00-30-42.log] [testng] 00:30:42,734 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff7d338 - End of configuration. [testng] [2024-12-09 00:30:42,812] [pool-1-thread-4] Initializing /data/big-images/8kx8k-grey.bmp: [testng] 00:30:42,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:30:42,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:42,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-09_00-30-42.log] [testng] 00:30:42,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@223d02da - End of configuration. [testng] [2024-12-09 00:30:42,899] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] 00:30:42,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:30:42,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:42,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-09_00-30-42.log] [testng] 00:30:42,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7d7029 - End of configuration. [testng] [2024-12-09 00:30:43,025] [pool-1-thread-2] Initializing /data/curtis/image4.bmp: [testng] 00:30:43,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:30:43,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:43,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-09_00-30-43.log] [testng] 00:30:43,027 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba9a2d7 - End of configuration. [testng] [2024-12-09 00:30:45,864] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2024-12-09 00:30:45,938] [pool-1-thread-10] Initializing /data/curtis/image5.bmp: [testng] [2024-12-09 00:30:46,002] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] [2024-12-09 00:30:46,068] [pool-1-thread-3] Initializing /data/curtis/image1.bmp: [testng] [2024-12-09 00:30:46,132] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2024-12-09 00:30:46,197] [pool-1-thread-2] Initializing /data/big-images/6kx6k.bmp: [testng] [2024-12-09 00:30:46,268] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2024-12-09 00:30:46,402] [pool-1-thread-6] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2024-12-09 00:30:46,672] [pool-1-thread-1] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2024-12-09 00:30:48,524] [pool-1-thread-3] Initializing /data/brian/images/23srp5dksub.bmp: [testng] [2024-12-09 00:30:48,611] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] [2024-12-09 00:30:48,721] [pool-1-thread-9] Initializing /data/ticket-12971/foo.bmp: [testng] [2024-12-09 00:30:48,790] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] [2024-12-09 00:30:48,858] [pool-1-thread-5] Initializing /data/brian/images/raw_a.bmp: [testng] [2024-12-09 00:30:48,928] [pool-1-thread-11] Initializing /data/curtis/image3.bmp: [testng] [2024-12-09 00:30:49,617] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] [2024-12-09 00:30:50,240] [pool-1-thread-6] Initializing /data/big-images/8kx8k.bmp: [testng] [2024-12-09 00:30:50,405] [pool-1-thread-9] Initializing /data/frank/cell_mask_error.bmp: [testng] [2024-12-09 00:30:50,479] [pool-1-thread-5] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 35 seconds Finished: SUCCESS