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Started by upstream project "BIOFORMATS-test-repo" build number 287 originally caused by: Started by upstream project "Trigger" build number 306 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7221986251477210892.sh + '[' pict = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45308_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:09:04,975 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:09:04,976 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:09:04,976 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:09:04,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:09:04,977 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:09:04,978 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:09:04,978 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:09:04,978 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:09:04,978 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:09:04,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:09:04,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:09:04,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:09:05,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:09:05,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:09:05,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:09:05,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:09:05,169 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:09:05,170 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:09:05,170 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:09:05,170 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:09:05,170 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:09:05,171 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:09:05,171 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-11 01:09:05,179] [main] java.version = 17.0.2 [testng] 01:09:05,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:09:05,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:05,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-11_01-09-05.log] [testng] 01:09:05,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-11 01:09:05,225] [main] testng.directory = /data [testng] [2024-12-11 01:09:05,225] [main] testng.configDirectory = /config [testng] [2024-12-11 01:09:05,234] [main] testng.multiplier = 1.0 [testng] [2024-12-11 01:09:05,235] [main] testng.in-memory = false [testng] [2024-12-11 01:09:05,235] [main] testng.allow-missing = false [testng] [2024-12-11 01:09:05,235] [main] user.language = en [testng] [2024-12-11 01:09:05,235] [main] user.country = ${user.country} [testng] [2024-12-11 01:09:05,235] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-11 01:09:05,783] [main] ---------------------------------------- [testng] [2024-12-11 01:09:05,783] [main] Total files: 25 [testng] [2024-12-11 01:09:05,783] [main] Scan time: 0.548 s (21 ms/file) [testng] [2024-12-11 01:09:05,783] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-11 01:09:25,624] [pool-1-thread-1] Initializing /data/brian/images/VENUS.pct: [testng] 01:09:25,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:09:25,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:25,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-11_01-09-25.log] [testng] 01:09:25,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75229d1f - End of configuration. [testng] [2024-12-11 01:09:26,472] [pool-1-thread-12] Initializing /data/misc/swlogo.pict: [testng] 01:09:26,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:09:26,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:26,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-11_01-09-26.log] [testng] 01:09:26,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73594e19 - End of configuration. [testng] [2024-12-11 01:09:27,484] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:09:27,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:09:27,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:27,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-11_01-09-27.log] [testng] 01:09:27,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e8da041 - End of configuration. [testng] [2024-12-11 01:09:28,471] [pool-1-thread-10] Initializing /data/brian/images/YEL.PCT: [testng] 01:09:28,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:09:28,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:28,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-11_01-09-28.log] [testng] 01:09:28,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22f74e8f - End of configuration. [testng] [2024-12-11 01:09:29,612] [pool-1-thread-9] Initializing /data/jqd/mireSixteen.pict: [testng] 01:09:29,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:09:29,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:29,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-11_01-09-29.log] [testng] 01:09:29,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50a6a18f - End of configuration. [testng] [2024-12-11 01:09:30,495] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 01:09:30,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:09:30,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:30,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-11_01-09-30.log] [testng] 01:09:30,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@196433ac - End of configuration. [testng] [2024-12-11 01:09:31,356] [pool-1-thread-7] Initializing /data/misc/planet2.pict: [testng] 01:09:31,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:09:31,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:31,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-11_01-09-31.log] [testng] 01:09:31,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dc69d2c - End of configuration. [testng] [2024-12-11 01:09:32,039] [pool-1-thread-6] Initializing /data/jqd/sixteenBit.pict: [testng] 01:09:32,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:09:32,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:32,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-11_01-09-32.log] [testng] 01:09:32,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37081102 - End of configuration. [testng] [2024-12-11 01:09:32,841] [pool-1-thread-5] Initializing /data/jqd/32bit.pict: [testng] 01:09:32,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:09:32,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:32,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-11_01-09-32.log] [testng] 01:09:32,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37370e56 - End of configuration. [testng] [2024-12-11 01:09:33,538] [pool-1-thread-4] Initializing /data/misc/planet.png: [testng] 01:09:33,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:09:33,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:33,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-11_01-09-33.log] [testng] 01:09:33,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11bee2d3 - End of configuration. [testng] [2024-12-11 01:09:33,616] [pool-1-thread-3] Initializing /data/jqd/mire32.pict: [testng] 01:09:33,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:09:33,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:33,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-11_01-09-33.log] [testng] 01:09:33,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@573e7e7b - End of configuration. [testng] [2024-12-11 01:09:34,150] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT: [testng] 01:09:34,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:09:34,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:34,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-11_01-09-34.log] [testng] 01:09:34,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d957e1e - End of configuration. [testng] [2024-12-11 01:09:37,933] [pool-1-thread-4] Initializing /data/brian/images/BLK.PCT: [testng] [2024-12-11 01:09:40,266] [pool-1-thread-9] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-12-11 01:09:41,035] [pool-1-thread-6] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-12-11 01:09:41,462] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT: [testng] [2024-12-11 01:09:42,032] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-12-11 01:09:42,462] [pool-1-thread-3] Initializing /data/brian/images/BLU.PCT: [testng] [2024-12-11 01:09:43,044] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-12-11 01:09:43,632] [pool-1-thread-7] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-12-11 01:09:44,097] [pool-1-thread-1] Initializing /data/misc/planet.pict: [testng] [2024-12-11 01:09:44,525] [pool-1-thread-5] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-12-11 01:09:44,936] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-12-11 01:09:45,390] [pool-1-thread-8] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2024-12-11 01:09:48,951] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 53 seconds Finished: SUCCESS