![[Jenkins]](/jenkins/static/d8ca237c/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 287 originally caused by: Started by upstream project "Trigger" build number 306 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins11702610047555568705.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45346_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:40:36,160 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:40:36,162 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 02:40:36,162 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:40:36,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:40:36,163 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:40:36,163 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:40:36,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:40:36,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:40:36,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:40:36,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:40:36,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:40:36,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:40:36,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:40:36,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:40:36,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:40:36,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:40:36,352 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:40:36,352 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:40:36,352 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:40:36,352 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:40:36,352 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 02:40:36,353 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 02:40:36,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-11 02:40:36,361] [main] java.version = 17.0.2 [testng] 02:40:36,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:40:36,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:36,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-11_02-40-36.log] [testng] 02:40:36,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-11 02:40:36,407] [main] testng.directory = /data [testng] [2024-12-11 02:40:36,407] [main] testng.configDirectory = /config [testng] [2024-12-11 02:40:36,416] [main] testng.multiplier = 1.0 [testng] [2024-12-11 02:40:36,416] [main] testng.in-memory = false [testng] [2024-12-11 02:40:36,416] [main] testng.allow-missing = false [testng] [2024-12-11 02:40:36,416] [main] user.language = en [testng] [2024-12-11 02:40:36,417] [main] user.country = ${user.country} [testng] [2024-12-11 02:40:36,417] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-11 02:46:23,321] [main] ---------------------------------------- [testng] [2024-12-11 02:46:23,321] [main] Total files: 268 [testng] [2024-12-11 02:46:23,321] [main] Scan time: 346.903 s (1294 ms/file) [testng] [2024-12-11 02:46:23,321] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-11 02:54:48,807] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] 02:54:48,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:54:48,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:48,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-11_02-54-48.log] [testng] 02:54:48,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9f3563f - End of configuration. [testng] [2024-12-11 02:54:50,279] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] 02:54:50,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:54:50,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:50,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-11_02-54-50.log] [testng] 02:54:50,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@557ca3bb - End of configuration. [testng] [2024-12-11 02:54:51,104] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] 02:54:51,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:54:51,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:51,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-11_02-54-51.log] [testng] 02:54:51,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f76d63d - End of configuration. [testng] [2024-12-11 02:54:52,012] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 02:54:52,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:54:52,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:52,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-11_02-54-52.log] [testng] 02:54:52,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59f642a0 - End of configuration. [testng] [2024-12-11 02:54:52,802] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 02:54:52,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:54:52,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:52,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-11_02-54-52.log] [testng] 02:54:52,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@553838ff - End of configuration. [testng] [2024-12-11 02:54:53,615] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] 02:54:53,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:54:53,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:53,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-11_02-54-53.log] [testng] 02:54:53,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25678a7 - End of configuration. [testng] [2024-12-11 02:54:54,350] [pool-1-thread-7] Initializing /data/steve/TIFF/HAFF SEM: [testng] 02:54:54,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:54:54,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:54,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-11_02-54-54.log] [testng] 02:54:54,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e12d672 - End of configuration. [testng] [2024-12-11 02:54:56,909] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] 02:54:56,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:54:56,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:56,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-11_02-54-56.log] [testng] 02:54:56,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dc87cf8 - End of configuration. [testng] [2024-12-11 02:54:57,746] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] 02:54:57,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:54:57,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:57,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-11_02-54-57.log] [testng] 02:54:57,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@358bc9b8 - End of configuration. [testng] [2024-12-11 02:54:58,811] [pool-1-thread-4] Initializing /data/steve/FITS/M51.fits: [testng] 02:54:58,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:54:58,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:58,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-11_02-54-58.log] [testng] 02:54:58,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15afdac1 - End of configuration. [testng] [2024-12-11 02:54:59,065] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] 02:54:59,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:54:59,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:59,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-11_02-54-59.log] [testng] 02:54:59,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30efffc4 - End of configuration. [testng] [2024-12-11 02:55:02,370] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 02:55:02,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:55:02,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:55:02,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-11_02-55-02.log] [testng] 02:55:02,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f53afc4 - End of configuration. [testng] [2024-12-11 02:55:09,785] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-12-11 02:55:13,990] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-12-11 02:55:15,172] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-12-11 02:55:17,913] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-12-11 02:55:20,708] [pool-1-thread-10] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-12-11 02:55:21,330] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-12-11 02:55:24,833] [pool-1-thread-5] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-12-11 02:55:25,760] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-12-11 02:55:31,254] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-12-11 02:55:34,087] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-12-11 02:55:35,118] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-12-11 02:55:35,680] [pool-1-thread-3] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-12-11 02:55:39,176] [pool-1-thread-4] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-12-11 02:55:41,204] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-12-11 02:55:42,001] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-12-11 02:55:43,376] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-12-11 02:55:44,417] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-12-11 02:55:49,382] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-12-11 02:55:52,158] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-12-11 02:55:54,661] [pool-1-thread-6] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-12-11 02:55:55,201] [pool-1-thread-12] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-12-11 02:55:58,034] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-12-11 02:55:58,282] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-12-11 02:55:59,775] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-12-11 02:56:01,001] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-12-11 02:56:01,630] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-12-11 02:56:03,224] [pool-1-thread-5] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-12-11 02:56:05,717] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-12-11 02:56:09,591] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-12-11 02:56:12,841] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-12-11 02:56:13,865] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-12-11 02:56:15,609] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-12-11 02:56:16,412] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-12-11 02:56:17,473] [pool-1-thread-5] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-12-11 02:56:22,700] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-12-11 02:56:27,882] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-12-11 02:56:28,939] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-12-11 02:56:30,449] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-12-11 02:56:31,025] [pool-1-thread-7] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-12-11 02:56:33,554] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-12-11 02:56:37,000] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-12-11 02:56:40,355] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-12-11 02:56:41,927] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-12-11 02:56:42,610] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-12-11 02:56:46,345] [pool-1-thread-8] Initializing /data/steve/FITS/M104.fits: [testng] [2024-12-11 02:56:46,583] [pool-1-thread-1] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-12-11 02:56:47,434] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-12-11 02:56:50,927] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-12-11 02:56:54,806] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-12-11 02:57:00,382] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-12-11 02:57:04,698] [pool-1-thread-8] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-12-11 02:57:06,188] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-12-11 02:57:09,184] [pool-1-thread-2] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-12-11 02:57:11,500] [pool-1-thread-3] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-12-11 02:57:14,274] [pool-1-thread-4] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-12-11 02:57:16,181] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-12-11 02:57:24,986] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-12-11 02:57:25,446] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-12-11 02:57:26,492] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-12-11 02:57:27,454] [pool-1-thread-7] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-12-11 02:57:30,565] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-12-11 02:57:31,193] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-12-11 02:57:33,395] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-12-11 02:57:33,890] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-12-11 02:57:36,072] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-12-11 02:57:37,162] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-12-11 02:57:40,701] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-12-11 02:57:41,960] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-12-11 02:57:42,975] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-12-11 02:57:45,886] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-12-11 02:57:46,801] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-12-11 02:57:49,700] [pool-1-thread-4] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-12-11 02:57:50,889] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-12-11 02:57:54,176] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-12-11 02:57:55,135] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-12-11 02:57:59,567] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-12-11 02:58:03,510] [pool-1-thread-12] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-12-11 02:58:04,653] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-12-11 02:58:07,660] [pool-1-thread-3] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-12-11 02:58:08,853] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-12-11 02:58:09,330] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-12-11 02:58:09,896] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-12-11 02:58:14,005] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-12-11 02:58:15,456] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-12-11 02:58:18,575] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-12-11 02:58:19,769] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-12-11 02:58:20,521] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-12-11 02:58:21,977] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-12-11 02:58:25,889] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-12-11 02:58:27,632] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-12-11 02:58:34,521] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-12-11 02:58:36,737] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-12-11 02:58:37,126] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-12-11 02:58:38,255] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-12-11 02:58:39,508] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-12-11 02:58:40,604] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-12-11 02:58:41,714] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-12-11 02:58:44,221] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-12-11 02:58:47,564] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-12-11 02:58:49,248] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-12-11 02:58:50,423] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-12-11 02:58:54,120] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-12-11 02:58:55,197] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-12-11 02:58:56,145] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-12-11 02:58:59,877] [pool-1-thread-9] Initializing /data/steve/FITS/M13.fits: [testng] [2024-12-11 02:59:00,466] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-12-11 02:59:01,445] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-12-11 02:59:04,799] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-12-11 02:59:08,569] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-12-11 02:59:11,247] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-12-11 02:59:13,568] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-12-11 02:59:16,183] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-12-11 02:59:17,242] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-12-11 02:59:20,299] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-12-11 02:59:20,899] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-12-11 02:59:22,614] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-12-11 02:59:25,664] [pool-1-thread-5] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-12-11 02:59:29,098] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-12-11 02:59:32,103] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-12-11 02:59:33,783] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-12-11 02:59:35,048] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-12-11 02:59:35,914] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-12-11 02:59:36,944] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-12-11 02:59:40,471] [pool-1-thread-2] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-12-11 02:59:44,592] [pool-1-thread-12] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-12-11 02:59:47,964] [pool-1-thread-7] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-12-11 02:59:53,758] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-12-11 02:59:54,955] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-12-11 02:59:58,368] [pool-1-thread-1] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-12-11 03:00:01,229] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-12-11 03:00:01,779] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-12-11 03:00:05,658] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-12-11 03:00:07,922] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-12-11 03:00:09,867] [pool-1-thread-9] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-12-11 03:00:12,600] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-12-11 03:00:14,086] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-12-11 03:00:15,018] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-12-11 03:00:16,805] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-12-11 03:00:17,921] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-12-11 03:00:19,229] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-12-11 03:00:20,678] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-12-11 03:00:21,482] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-12-11 03:00:25,288] [pool-1-thread-8] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-12-11 03:00:27,549] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-12-11 03:00:28,860] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-12-11 03:00:29,747] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-12-11 03:00:31,164] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-12-11 03:00:31,841] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 19 seconds Finished: SUCCESS