![[Jenkins]](/jenkins/static/d8ca237c/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 288 originally caused by: Started by upstream project "Trigger" build number 307 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins16101064199045412327.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45432_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:53,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:53,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:22:53,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:53,556 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:53,556 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:53,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:53,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:53,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:53,558 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:53,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:53,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:53,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:53,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:53,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:53,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:53,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:53,754 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:53,754 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:53,754 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:53,755 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:53,755 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:22:53,756 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:22:53,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-12 00:22:53,765] [main] java.version = 21 [testng] 00:22:53,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:53,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:53,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_00-22-53.log] [testng] 00:22:53,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-12 00:22:53,812] [main] testng.directory = /data [testng] [2024-12-12 00:22:53,812] [main] testng.configDirectory = /config [testng] [2024-12-12 00:22:53,821] [main] testng.multiplier = 1.0 [testng] [2024-12-12 00:22:53,821] [main] testng.in-memory = false [testng] [2024-12-12 00:22:53,821] [main] testng.allow-missing = false [testng] [2024-12-12 00:22:53,821] [main] user.language = en [testng] [2024-12-12 00:22:53,821] [main] user.country = ${user.country} [testng] [2024-12-12 00:22:53,821] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-12 00:23:17,579] [main] ---------------------------------------- [testng] [2024-12-12 00:23:17,579] [main] Total files: 316 [testng] [2024-12-12 00:23:17,579] [main] Scan time: 23.758 s (75 ms/file) [testng] [2024-12-12 00:23:17,580] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 193 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-12 00:43:43,466] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] 00:43:43,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:43:43,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:43,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-12_00-43-43.log] [testng] 00:43:43,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@409e02f8 - End of configuration. [testng] [2024-12-12 00:43:44,730] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] 00:43:44,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:43:44,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:44,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-12_00-43-44.log] [testng] 00:43:44,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b586253 - End of configuration. [testng] [2024-12-12 00:43:49,586] [pool-1-thread-11] Initializing /data/qa-17917/f10010.oir: [testng] 00:43:49,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:43:49,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:49,587 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-12_00-43-49.log] [testng] 00:43:49,587 |-INFO in ch.qos.logback.core.sift.SiftProcessor@adc44e0 - End of configuration. [testng] [2024-12-12 00:44:18,921] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] 00:44:18,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:44:18,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:18,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-12_00-44-18.log] [testng] 00:44:18,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b06cb75 - End of configuration. [testng] [2024-12-12 00:44:19,634] [pool-1-thread-9] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] 00:44:19,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:44:19,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:19,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-12_00-44-19.log] [testng] 00:44:19,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73e187b - End of configuration. [testng] [2024-12-12 00:44:20,312] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 00:44:20,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:44:20,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:20,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-12_00-44-20.log] [testng] 00:44:20,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e0bf920 - End of configuration. [testng] [2024-12-12 00:44:21,674] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] 00:44:21,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:44:21,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:21,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-12_00-44-21.log] [testng] 00:44:21,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dfc8e0f - End of configuration. [testng] [2024-12-12 00:44:22,361] [pool-1-thread-6] Initializing /data/olympus/XYZt.vsi: [testng] 00:44:22,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:44:22,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:22,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-12_00-44-22.log] [testng] 00:44:22,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a4872df - End of configuration. [testng] [2024-12-12 00:44:23,057] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] 00:44:23,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:44:23,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:23,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-12_00-44-23.log] [testng] 00:44:23,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45662e9b - End of configuration. [testng] [2024-12-12 00:44:24,400] [pool-1-thread-4] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] 00:44:24,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:44:24,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:24,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-12_00-44-24.log] [testng] 00:44:24,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1001100 - End of configuration. [testng] [2024-12-12 00:44:25,470] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] 00:44:25,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:44:25,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:25,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-12_00-44-25.log] [testng] 00:44:25,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@595c496c - End of configuration. [testng] [2024-12-12 00:44:26,079] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] 00:44:26,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:44:26,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:26,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-12_00-44-26.log] [testng] 00:44:26,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8cdc06 - End of configuration. [testng] [2024-12-12 00:44:35,356] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-12-12 00:44:37,160] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-12-12 00:44:38,496] [pool-1-thread-8] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-12-12 00:44:40,663] [pool-1-thread-4] Initializing /data/qa-17335/1.oir: [testng] [2024-12-12 00:44:41,445] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-12-12 00:44:43,549] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-12-12 00:44:44,468] [pool-1-thread-2] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-12-12 00:44:45,988] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-12-12 00:44:50,421] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-12-12 00:44:53,462] [pool-1-thread-2] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-12-12 00:44:57,921] [pool-1-thread-3] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-12-12 00:44:58,934] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-12-12 00:45:03,908] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-12-12 00:45:05,640] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-12-12 00:45:06,813] [pool-1-thread-8] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-12-12 00:45:07,877] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-12-12 00:45:08,874] [pool-1-thread-9] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-12-12 00:45:15,519] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-12-12 00:45:16,729] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-12-12 00:45:19,223] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-12-12 00:45:21,157] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-12-12 00:45:22,460] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-12-12 00:45:23,197] [pool-1-thread-9] Initializing /data/qa-17270/stack1.oir: [testng] [2024-12-12 00:45:26,673] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-12-12 00:45:29,227] [pool-1-thread-1] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-12-12 00:45:32,913] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-12-12 00:45:34,014] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-12-12 00:45:36,613] [pool-1-thread-3] Initializing /data/qa-17270/image1.oir: [testng] [2024-12-12 00:45:39,177] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-12-12 00:45:40,010] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-12-12 00:45:42,883] [pool-1-thread-6] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-12-12 00:45:43,839] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-12-12 00:45:46,584] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-12 00:45:49,887] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-12-12 00:45:53,122] [pool-1-thread-2] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-12-12 00:45:56,643] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-12-12 00:46:00,672] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-12-12 00:46:02,121] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-12-12 00:46:03,615] [pool-1-thread-4] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-12-12 00:46:07,065] [pool-1-thread-5] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-12-12 00:46:08,794] [pool-1-thread-7] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-12-12 00:46:10,949] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-12-12 00:46:11,931] [pool-1-thread-8] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-12-12 00:46:14,141] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-12-12 00:46:22,306] [pool-1-thread-9] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-12-12 00:46:25,008] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-12-12 00:46:26,181] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-12-12 00:46:30,425] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-12-12 00:46:34,883] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-12-12 00:46:36,484] [pool-1-thread-8] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-12-12 00:46:38,351] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-12-12 00:46:39,523] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-12-12 00:46:46,797] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-12-12 00:46:48,785] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-12-12 00:46:50,156] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-12-12 00:46:51,533] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-12-12 00:46:53,754] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-12-12 00:46:55,685] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-12-12 00:47:04,427] [pool-1-thread-8] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-12-12 00:47:27,189] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-12-12 00:47:36,643] [pool-1-thread-12] Initializing /data/olympus/XYZt.oir: [testng] [2024-12-12 00:47:42,455] [pool-1-thread-9] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-12-12 00:47:44,199] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-12-12 00:47:47,410] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-12-12 00:47:50,003] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-12-12 00:47:52,103] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-12-12 00:48:02,766] [pool-1-thread-4] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-12-12 00:48:11,875] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-12-12 00:48:13,463] [pool-1-thread-7] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-12-12 00:48:15,259] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-12-12 00:48:16,111] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-12-12 00:48:23,309] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-12 00:48:26,028] [pool-1-thread-5] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-12-12 00:48:29,559] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-12-12 00:48:30,902] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-12-12 00:48:32,489] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-12-12 00:48:40,408] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-12-12 00:48:41,452] [pool-1-thread-5] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-12-12 00:49:34,834] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-12-12 00:49:35,277] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-12-12 00:49:38,145] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-12-12 00:49:39,855] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-12-12 00:49:50,746] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-12-12 00:49:53,750] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-12-12 00:49:56,237] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-12-12 00:49:57,677] [pool-1-thread-1] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-12-12 00:49:59,128] [pool-1-thread-7] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-12-12 00:50:05,416] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-12-12 00:50:07,940] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-12-12 00:50:08,740] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-12-12 00:50:11,946] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-12-12 00:50:12,712] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-12-12 00:50:14,188] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-12-12 00:50:19,264] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-12-12 00:50:24,831] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-12-12 00:50:26,441] [pool-1-thread-7] Initializing /data/qa-17919/f10187.oir: [testng] [2024-12-12 00:50:44,895] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-12-12 00:50:46,523] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-12-12 00:50:53,446] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-12-12 00:50:54,910] [pool-1-thread-4] Initializing /data/imagesc-105684/1202-interval_30sec_sequence_frame.oir: [testng] [2024-12-12 00:50:55,659] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-12-12 00:50:59,111] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-12-12 00:51:01,695] [pool-1-thread-11] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-12-12 00:51:06,026] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-12-12 00:51:11,097] [pool-1-thread-11] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-12-12 00:51:12,947] [pool-1-thread-10] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-12-12 00:51:14,009] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-12-12 00:51:14,713] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-12-12 00:51:19,666] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-12-12 00:51:20,843] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-12-12 00:51:23,538] [pool-1-thread-1] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-12-12 00:51:25,473] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-12-12 00:51:27,302] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-12-12 00:51:28,345] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-12-12 00:51:30,754] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-12-12 00:51:33,088] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-12-12 00:51:36,326] [pool-1-thread-4] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-12-12 00:51:38,721] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-12-12 00:51:40,863] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-12-12 00:51:42,504] [pool-1-thread-3] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-12-12 00:51:43,572] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-12-12 00:51:45,162] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-12-12 00:51:51,939] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-12-12 00:51:53,019] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-12-12 00:51:53,833] [pool-1-thread-9] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-12-12 00:51:54,513] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-12-12 00:51:55,126] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-12-12 00:51:57,866] [pool-1-thread-8] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-12-12 00:52:03,302] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-12-12 00:52:04,530] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-12-12 00:52:06,392] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-12-12 00:52:07,681] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-12-12 00:52:09,058] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-12-12 00:52:09,610] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-12-12 00:52:10,796] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-12-12 00:52:14,536] [pool-1-thread-8] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-12-12 00:52:15,724] [pool-1-thread-12] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-12-12 00:52:19,813] [pool-1-thread-4] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-12-12 00:52:24,290] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-12-12 00:52:24,973] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-12-12 00:52:26,555] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-12-12 00:52:27,765] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-12-12 00:52:28,453] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-12-12 00:52:32,110] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-12-12 00:52:36,527] [pool-1-thread-4] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-12-12 00:52:37,375] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-12-12 00:52:38,239] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-12 00:52:40,057] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-12-12 00:52:41,789] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-12-12 00:52:42,853] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-12-12 00:52:44,173] [pool-1-thread-1] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-12-12 00:52:45,486] [pool-1-thread-8] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-12-12 00:52:51,523] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-12-12 00:52:52,957] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-12-12 00:53:00,046] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-12-12 00:53:00,897] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-12-12 00:53:02,814] [pool-1-thread-3] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-12-12 00:53:03,553] [pool-1-thread-11] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-12-12 00:53:05,121] [pool-1-thread-8] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-12-12 00:53:06,408] [pool-1-thread-1] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-12-12 00:53:12,880] [pool-1-thread-9] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-12-12 00:53:16,435] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-12-12 00:53:19,762] [pool-1-thread-12] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-12-12 00:53:21,238] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-12-12 00:53:24,186] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-12-12 00:53:25,831] [pool-1-thread-10] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-12-12 00:53:28,254] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-12-12 00:53:29,017] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-12-12 00:53:30,863] [pool-1-thread-9] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-12-12 00:53:33,238] [pool-1-thread-2] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-12-12 00:53:37,401] [pool-1-thread-12] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-12-12 00:53:39,579] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-12-12 00:53:40,722] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-12-12 00:53:43,044] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-12-12 00:53:45,390] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-12-12 00:53:52,929] [pool-1-thread-3] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-12-12 00:53:55,659] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-12-12 00:53:58,450] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-12-12 00:54:03,215] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-12-12 00:54:05,501] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-12-12 00:54:07,032] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10229, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 65 minutes 58 seconds Finished: SUCCESS