![[Jenkins]](/jenkins/static/d8ca237c/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 288 originally caused by: Started by upstream project "Trigger" build number 307 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4240566802254651297.sh + '[' visitech = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45438_merge_ci -v /uod/idr/repos/curated/visitech:/data -v /uod/idr-scratch/merge-ci/curated/visitech:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:27:38,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:27:38,077 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:27:38,077 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:27:38,078 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:27:38,078 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:27:38,078 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:27:38,079 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:27:38,079 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:27:38,079 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:27:38,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:27:38,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:27:38,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:27:38,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:27:38,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:27:38,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:27:38,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:27:38,297 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:27:38,297 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:27:38,297 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:27:38,298 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:27:38,298 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:27:38,298 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:27:38,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 219 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-12 00:27:38,308] [main] java.version = 21 [testng] 00:27:38,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:27:38,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:38,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_00-27-38.log] [testng] 00:27:38,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-12 00:27:38,354] [main] testng.directory = /data [testng] [2024-12-12 00:27:38,354] [main] testng.configDirectory = /config [testng] [2024-12-12 00:27:38,363] [main] testng.multiplier = 1.0 [testng] [2024-12-12 00:27:38,364] [main] testng.in-memory = false [testng] [2024-12-12 00:27:38,364] [main] testng.allow-missing = false [testng] [2024-12-12 00:27:38,364] [main] user.language = en [testng] [2024-12-12 00:27:38,364] [main] user.country = ${user.country} [testng] [2024-12-12 00:27:38,364] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-12 00:28:10,098] [main] ---------------------------------------- [testng] [2024-12-12 00:28:10,098] [main] Total files: 45 [testng] [2024-12-12 00:28:10,098] [main] Scan time: 31.734 s (705 ms/file) [testng] [2024-12-12 00:28:10,099] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-12 00:29:08,178] [pool-1-thread-1] Initializing /data/scott/2 channel_Z_timelaps/525.tif: [testng] 00:29:08,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:29:08,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:08,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-12_00-29-08.log] [testng] 00:29:08,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ac94473 - End of configuration. [testng] [2024-12-12 00:29:11,169] [pool-1-thread-12] Initializing /data/scott/2 channel z 6 xy stage positions/2 chanel z 3x2 GRID Report.html: [testng] 00:29:11,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:29:11,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:11,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-12_00-29-11.log] [testng] 00:29:11,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7692c40 - End of configuration. [testng] [2024-12-12 00:29:12,353] [pool-1-thread-11] Initializing /data/brian/060916-01 Report.html: [testng] 00:29:12,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:29:12,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:12,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-12_00-29-12.log] [testng] 00:29:12,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a362bae - End of configuration. [testng] [2024-12-12 00:29:13,090] [pool-1-thread-10] Initializing /data/scott/2 Channel z timelaps original/2 channel_Z_timelaps Report.html: [testng] 00:29:13,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:29:13,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:13,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-12_00-29-13.log] [testng] 00:29:13,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79b795ae - End of configuration. [testng] [2024-12-12 00:29:13,762] [pool-1-thread-9] Initializing /data/brian/ScreenShot.jpg: [testng] 00:29:13,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:29:13,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:13,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-12_00-29-13.log] [testng] 00:29:13,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45a48f90 - End of configuration. [testng] [2024-12-12 00:29:14,057] [pool-1-thread-8] Initializing /data/brian/070613reA1_2 Report.html: [testng] 00:29:14,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:29:14,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:14,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-12_00-29-14.log] [testng] 00:29:14,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1675228b - End of configuration. [testng] [2024-12-12 00:29:14,673] [pool-1-thread-7] Initializing /data/scott/2 channel_Z_timelaps/597.tif: [testng] 00:29:14,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:29:14,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:14,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-12_00-29-14.log] [testng] 00:29:14,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ec23d6c - End of configuration. [testng] [2024-12-12 00:29:17,846] [pool-1-thread-6] Initializing /data/scott/2 Channel Z timelaps repeat/2 channel_Z_timelaps 2 Report.html: [testng] 00:29:17,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:29:17,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:17,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-12_00-29-17.log] [testng] 00:29:17,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11be2ec0 - End of configuration. [testng] [2024-12-12 00:29:18,563] [pool-1-thread-5] Initializing /data/kazem/noname Report.html: [testng] 00:29:18,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:29:18,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:18,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-12_00-29-18.log] [testng] 00:29:18,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30bea65c - End of configuration. [testng] [2024-12-12 00:29:19,691] [pool-1-thread-4] Initializing /data/oliver/20x/491 Report.html: [testng] 00:29:19,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:29:19,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:19,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-12_00-29-19.log] [testng] 00:29:19,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a0448ae - End of configuration. [testng] [2024-12-12 00:29:21,819] [pool-1-thread-3] Initializing /data/scott/2 Channel z no timelaps/2 chanel z no time Report.html: [testng] 00:29:21,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:29:21,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:21,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-12_00-29-21.log] [testng] 00:29:21,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6641b803 - End of configuration. [testng] [2024-12-12 00:29:22,559] [pool-1-thread-2] Initializing /data/brian/060916-01-488.tif: [testng] 00:29:22,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:29:22,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:22,560 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-12_00-29-22.log] [testng] 00:29:22,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4301436a - End of configuration. [testng] [2024-12-12 00:29:35,807] [pool-1-thread-9] Initializing /data/oliver/20x/488 Report.html: [testng] [2024-12-12 00:29:50,414] [pool-1-thread-8] Initializing /data/brian/060916-01-561.tif: [testng] [2024-12-12 00:29:55,299] [pool-1-thread-1] Initializing /data/scott/2 channel_Z_timelaps/2 channel_Z_timelaps Report.html: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 34 seconds Finished: SUCCESS