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Started by upstream project "BIOFORMATS-test-repo" build number 288 originally caused by: Started by upstream project "Trigger" build number 307 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins8243994559945054345.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45506_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:20:47,852 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:20:47,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 03:20:47,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:20:47,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:20:47,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:20:47,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:20:47,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:20:47,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:20:47,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:20:47,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:20:47,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:20:47,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:20:48,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:20:48,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:20:48,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:20:48,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:20:48,058 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:20:48,058 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:20:48,059 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:20:48,059 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:20:48,059 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 03:20:48,060 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 03:20:48,060 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 204 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-12 03:20:48,069] [main] java.version = 21 [testng] 03:20:48,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:20:48,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:48,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_03-20-48.log] [testng] 03:20:48,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-12 03:20:48,119] [main] testng.directory = /data [testng] [2024-12-12 03:20:48,119] [main] testng.configDirectory = /config [testng] [2024-12-12 03:20:48,129] [main] testng.multiplier = 1.0 [testng] [2024-12-12 03:20:48,130] [main] testng.in-memory = false [testng] [2024-12-12 03:20:48,130] [main] testng.allow-missing = false [testng] [2024-12-12 03:20:48,130] [main] user.language = en [testng] [2024-12-12 03:20:48,130] [main] user.country = ${user.country} [testng] [2024-12-12 03:20:48,130] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-12 03:39:57,686] [main] ---------------------------------------- [testng] [2024-12-12 03:39:57,687] [main] Total files: 7329 [testng] [2024-12-12 03:39:57,687] [main] Scan time: 1149.556 s (156 ms/file) [testng] [2024-12-12 03:39:57,687] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-12 04:04:18,224] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] 04:04:18,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:04:18,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:18,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-12_04-04-18.log] [testng] 04:04:18,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47ca35a8 - End of configuration. [testng] [2024-12-12 04:05:24,861] [pool-1-thread-12] Initializing /data/graham/G_Wright deconvolved.stk: [testng] 04:05:24,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:05:24,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:24,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-12_04-05-24.log] [testng] 04:05:24,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44ee5f16 - End of configuration. [testng] [2024-12-12 04:05:29,537] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] 04:05:29,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:05:29,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:29,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-12_04-05-29.log] [testng] 04:05:29,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504376bb - End of configuration. [testng] [2024-12-12 04:05:35,092] [pool-1-thread-10] Initializing /data/aaron/metamorph.stk: [testng] 04:05:35,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:05:35,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:35,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-12_04-05-35.log] [testng] 04:05:35,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f86b77b - End of configuration. [testng] [2024-12-12 04:05:41,792] [pool-1-thread-9] Initializing /data/jae/RGB_s34.tif: [testng] 04:05:41,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:05:41,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:41,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-12_04-05-41.log] [testng] 04:05:41,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c5aa5b5 - End of configuration. [testng] [2024-12-12 04:05:51,543] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] 04:05:51,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:05:51,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:51,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-12_04-05-51.log] [testng] 04:05:51,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@482cfb15 - End of configuration. [testng] [2024-12-12 04:05:57,669] [pool-1-thread-7] Initializing /data/samples/zserEight.stk: [testng] 04:05:57,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:05:57,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:57,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-12_04-05-57.log] [testng] 04:05:57,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d67e41a - End of configuration. [testng] [2024-12-12 04:06:03,139] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] 04:06:03,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:06:03,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:03,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-12_04-06-03.log] [testng] 04:06:03,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e0b6593 - End of configuration. [testng] [2024-12-12 04:06:04,168] [pool-1-thread-5] Initializing /data/thomas/t_test2001.tif: [testng] 04:06:04,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:06:04,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:04,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-12_04-06-04.log] [testng] 04:06:04,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44465a1e - End of configuration. [testng] [2024-12-12 04:06:11,309] [pool-1-thread-4] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 04:06:11,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:06:11,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:11,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-12_04-06-11.log] [testng] 04:06:11,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@501ba285 - End of configuration. [testng] [2024-12-12 04:06:17,162] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] 04:06:17,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:06:17,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:17,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-12_04-06-17.log] [testng] 04:06:17,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52752ae - End of configuration. [testng] [2024-12-12 04:06:24,008] [pool-1-thread-3] Used files list does not include base file [testng] [2024-12-12 04:06:24,011] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] 04:06:24,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:06:24,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:24,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-12_04-06-24.log] [testng] 04:06:24,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e0bc6a2 - End of configuration. [testng] [2024-12-12 04:07:19,178] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-12-12 04:07:57,953] [pool-1-thread-7] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-12-12 04:08:05,459] [pool-1-thread-10] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-12-12 04:08:10,422] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-12-12 04:08:15,648] [pool-1-thread-4] Used files list does not include base file [testng] [2024-12-12 04:08:15,649] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-12-12 04:08:20,402] [pool-1-thread-5] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-12-12 04:08:25,474] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-12-12 04:08:33,433] [pool-1-thread-8] Used files list does not include base file [testng] [2024-12-12 04:08:33,565] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-12-12 04:08:51,222] [pool-1-thread-6] Initializing /data/david/tl4.tif: [testng] [2024-12-12 04:09:01,817] [pool-1-thread-3] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-12-12 04:09:08,115] [pool-1-thread-12] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-12-12 04:09:17,669] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-12-12 04:09:24,028] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-12-12 04:09:29,319] [pool-1-thread-7] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-12-12 04:09:35,232] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-12-12 04:09:59,149] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-12-12 04:10:19,636] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-12-12 04:10:26,552] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-12-12 04:10:27,117] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-12-12 04:10:35,486] [pool-1-thread-10] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-12-12 04:10:40,933] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-12 04:10:44,876] [pool-1-thread-9] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-12-12 04:10:50,562] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-12-12 04:10:53,977] [pool-1-thread-3] Used files list does not include base file [testng] [2024-12-12 04:10:57,747] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-12-12 04:11:01,304] [pool-1-thread-2] Initializing /data/jerome/deconv.STK: [testng] [2024-12-12 04:11:08,259] [pool-1-thread-10] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-12-12 04:11:15,600] [pool-1-thread-7] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-12-12 04:11:18,369] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-12-12 04:11:22,838] [pool-1-thread-9] Used files list does not include base file [testng] [2024-12-12 04:11:30,238] [pool-1-thread-2] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-12-12 04:11:44,383] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-12-12 04:11:49,772] [pool-1-thread-7] Initializing /data/qa-16915/m-01.tif: [testng] [2024-12-12 04:11:56,238] [pool-1-thread-6] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-12-12 04:12:01,799] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-12-12 04:12:08,994] [pool-1-thread-10] Used files list does not include base file [testng] [2024-12-12 04:12:09,268] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-12-12 04:12:19,818] [pool-1-thread-2] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-12-12 04:12:25,449] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-12 04:12:29,984] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-12-12 04:12:37,090] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-12 04:12:41,204] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-12-12 04:12:47,698] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-12-12 04:12:52,045] [pool-1-thread-8] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-12-12 04:12:55,583] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-12-12 04:13:01,263] [pool-1-thread-2] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-12-12 04:13:17,705] [pool-1-thread-5] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-12-12 04:13:30,475] [pool-1-thread-6] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-12-12 04:13:34,535] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-12-12 04:13:43,488] [pool-1-thread-1] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-12-12 04:14:10,205] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-12-12 04:14:15,236] [pool-1-thread-7] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-12-12 04:15:21,461] [pool-1-thread-11] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-12-12 04:15:39,577] [pool-1-thread-9] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-12-12 04:15:43,400] [pool-1-thread-10] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-12-12 04:15:58,019] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-12-12 04:16:03,015] [pool-1-thread-8] Used files list does not include base file [testng] [2024-12-12 04:16:03,077] [pool-1-thread-11] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-12-12 04:16:10,519] [pool-1-thread-6] Initializing /data/josh/2101to800.stk: [testng] [2024-12-12 04:16:29,230] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-12-12 04:16:33,845] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-12-12 04:16:38,336] [pool-1-thread-1] Used files list does not include base file [testng] [2024-12-12 04:16:38,386] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-12-12 04:16:45,384] [pool-1-thread-9] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-12-12 04:16:52,806] [pool-1-thread-11] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-12-12 04:16:56,972] [pool-1-thread-12] Initializing /data/thomas/test.tif: [testng] [2024-12-12 04:17:02,966] [pool-1-thread-4] Initializing 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Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-12-12 04:18:46,015] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-12-12 04:18:50,291] [pool-1-thread-9] Used files list does not include base file [testng] [2024-12-12 04:18:50,366] [pool-1-thread-6] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-12-12 04:18:59,435] [pool-1-thread-8] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-12-12 04:19:03,589] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-12-12 04:19:08,484] [pool-1-thread-5] Used files list does not include base file [testng] [2024-12-12 04:19:18,287] [pool-1-thread-12] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-12-12 04:20:10,307] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-12-12 04:20:13,625] [pool-1-thread-11] Initializing /data/josh/2101to600f.stk: [testng] [2024-12-12 04:20:56,124] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-12-12 04:21:08,930] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-12 04:21:24,402] [pool-1-thread-3] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-12-12 04:21:28,945] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-12-12 04:21:38,983] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-12 04:21:47,721] [pool-1-thread-1] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-12-12 04:22:05,051] [pool-1-thread-3] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-12-12 04:22:26,228] [pool-1-thread-1] Initializing /data/dave/Z Series.stk: [testng] [2024-12-12 04:22:33,536] [pool-1-thread-8] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-12-12 04:22:43,419] [pool-1-thread-3] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-12-12 04:23:31,568] [pool-1-thread-1] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-12-12 04:23:36,766] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-12-12 04:23:53,713] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-12-12 04:23:57,828] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-12-12 04:24:05,357] [pool-1-thread-9] Used files list does not include base file [testng] [2024-12-12 04:24:05,455] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-12-12 04:24:37,362] [pool-1-thread-1] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-12-12 04:24:43,441] [pool-1-thread-8] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-12-12 04:24:47,260] [pool-1-thread-5] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-12-12 04:25:58,362] [pool-1-thread-1] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-12-12 04:26:08,913] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-12-12 04:26:37,592] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-12-12 04:26:41,492] [pool-1-thread-4] Used files list does not include base file [testng] [2024-12-12 04:26:45,279] [pool-1-thread-8] Initializing /data/samples/zseries.stk: [testng] [2024-12-12 04:27:02,244] [pool-1-thread-8] Initializing /data/samples/10xcalib.tif: [testng] [2024-12-12 04:27:05,011] [pool-1-thread-9] Initializing /data/samples/zserSixteen.stk: [testng] [2024-12-12 04:27:15,721] [pool-1-thread-1] Initializing 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04:28:13,351] [pool-1-thread-9] Initializing /data/qa-16915/m-02.tif: [testng] [2024-12-12 04:28:19,828] [pool-1-thread-3] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-12-12 04:28:37,846] [pool-1-thread-1] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-12-12 04:28:43,976] [pool-1-thread-8] Initializing /data/steve/Experiment2.stk: [testng] [2024-12-12 04:28:50,539] [pool-1-thread-9] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-12-12 04:29:13,461] [pool-1-thread-9] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-12-12 04:29:43,700] [pool-1-thread-4] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-12-12 04:29:53,090] [pool-1-thread-8] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-12-12 04:30:13,791] [pool-1-thread-3] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-12-12 04:30:19,024] [pool-1-thread-9] Initializing 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[testng] [2024-12-12 04:32:08,119] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-12-12 04:32:31,452] [pool-1-thread-3] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-12-12 04:32:53,295] [pool-1-thread-3] Initializing /data/ascb/golgi marker.tif: [testng] [2024-12-12 04:33:06,560] [pool-1-thread-8] Initializing /data/samples/diatoms3d.stk: [testng] [2024-12-12 04:33:18,662] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-12-12 04:33:37,669] [pool-1-thread-8] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-12-12 04:33:45,846] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-12-12 04:33:53,581] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-12 04:34:02,260] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-12-12 04:34:16,486] [pool-1-thread-8] Initializing /data/samples/10xcalib.stk: [testng] [2024-12-12 04:34:23,538] [pool-1-thread-4] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-12-12 04:34:34,928] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-12 04:34:49,277] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-12-12 04:34:54,829] [pool-1-thread-8] Initializing /data/qa-16887/m-01.tif: [testng] [2024-12-12 04:35:03,416] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-12 04:35:06,981] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-12-12 04:35:10,390] [pool-1-thread-1] Used files list does not include base file [testng] [2024-12-12 04:35:10,598] [pool-1-thread-5] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-12-12 04:35:21,770] [pool-1-thread-8] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-12-12 04:35:41,238] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-12-12 04:36:18,845] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-12-12 04:36:30,611] [pool-1-thread-3] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-12-12 04:36:35,876] [pool-1-thread-1] Initializing /data/qa-16915/m-04.tif: [testng] [2024-12-12 04:36:44,850] [pool-1-thread-5] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-12-12 04:36:48,280] [pool-1-thread-6] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-12-12 04:37:06,854] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-12-12 04:37:16,394] [pool-1-thread-6] Initializing /data/alex/Selected FITC.stk: [testng] [2024-12-12 04:37:20,917] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-12-12 04:37:37,194] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-12-12 04:37:45,735] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-12-12 04:37:55,933] [pool-1-thread-6] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-12-12 04:38:11,400] [pool-1-thread-1] Initializing /data/steve/Experiment2.tif: [testng] [2024-12-12 04:38:16,042] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-12-12 04:38:40,287] [pool-1-thread-1] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-12-12 04:38:52,460] [pool-1-thread-5] Initializing /data/ascb/mt aim.tif: [testng] [2024-12-12 04:39:18,056] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-12-12 04:39:25,665] [pool-1-thread-5] Used files list does not include base file [testng] [2024-12-12 04:39:53,793] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-12-12 04:40:29,765] [pool-1-thread-6] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-12-12 04:40:57,346] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-12-12 04:41:15,497] [pool-1-thread-5] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-12-12 04:41:47,540] [pool-1-thread-6] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-12-12 04:42:29,103] [pool-1-thread-6] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-12-12 04:42:52,339] [pool-1-thread-6] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-12-12 04:43:19,388] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-12 04:43:23,619] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-12-12 04:43:28,857] [pool-1-thread-1] Used files list does not include base file [testng] [2024-12-12 04:43:56,785] [pool-1-thread-5] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-12-12 04:44:02,852] [pool-1-thread-6] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-12-12 04:44:26,321] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-12-12 04:44:33,213] [pool-1-thread-6] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-12-12 04:44:50,235] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-12-12 04:45:31,405] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-12-12 04:45:50,903] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-12-12 04:45:56,708] [pool-1-thread-6] Initializing /data/cumol-test-series/23.001: [testng] [2024-12-12 04:46:02,531] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk: [testng] [2024-12-12 04:46:43,707] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-12-12 04:46:49,612] [pool-1-thread-3] Used files list does not include base file [testng] [2024-12-12 04:47:04,516] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-12-12 04:47:59,000] [pool-1-thread-1] Initializing /data/samples/zser24.stk: [testng] [2024-12-12 04:48:23,857] [pool-1-thread-6] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-12-12 04:48:35,211] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-12-12 04:49:39,059] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-12 04:49:52,842] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-12 04:50:00,289] [pool-1-thread-3] Initializing /data/grant/X.STK: [testng] [2024-12-12 04:50:23,934] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-12-12 04:50:35,371] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-12-12 04:50:38,337] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-12-12 04:50:41,826] [pool-1-thread-6] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-12-12 04:50:50,232] [pool-1-thread-5] Initializing /data/josh/2101to400astk.stk: [testng] [2024-12-12 04:51:18,596] [pool-1-thread-11] Initializing /data/josh/2101to600astk.stk: [testng] [2024-12-12 04:52:25,348] [pool-1-thread-1] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-12-12 04:52:39,669] [pool-1-thread-3] Initializing /data/josh/2101to600e.stk: [testng] [2024-12-12 04:52:58,070] [pool-1-thread-4] Initializing /data/qa-30870/220209_posit5.tif: [testng] 13:28:41,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:28:41,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:28:41,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-12_13-28-41.log] [testng] 13:28:41,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66234072 - End of configuration. [testng] 13:40:03,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:40:03,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:40:03,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_13-40-03.log] [testng] 13:40:03,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4571edbf - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 619 minutes 20 seconds Finished: SUCCESS