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Started by upstream project "BIOFORMATS-test-repo" build number 288 originally caused by: Started by upstream project "Trigger" build number 307 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins17516324184934866646.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45512_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:57:54,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:57:54,421 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 03:57:54,421 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:57:54,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:57:54,423 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:57:54,423 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:57:54,423 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:57:54,423 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:57:54,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:57:54,424 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:57:54,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:57:54,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:57:54,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:57:54,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:57:54,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:57:54,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:57:54,607 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:57:54,607 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:57:54,607 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:57:54,607 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:57:54,608 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 03:57:54,608 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 03:57:54,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-12 03:57:54,617] [main] java.version = 21 [testng] 03:57:54,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:57:54,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:54,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_03-57-54.log] [testng] 03:57:54,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-12 03:57:54,664] [main] testng.directory = /data [testng] [2024-12-12 03:57:54,664] [main] testng.configDirectory = /config [testng] [2024-12-12 03:57:54,672] [main] testng.multiplier = 1.0 [testng] [2024-12-12 03:57:54,673] [main] testng.in-memory = false [testng] [2024-12-12 03:57:54,673] [main] testng.allow-missing = false [testng] [2024-12-12 03:57:54,673] [main] user.language = en [testng] [2024-12-12 03:57:54,673] [main] user.country = ${user.country} [testng] [2024-12-12 03:57:54,673] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-12 03:58:34,463] [main] ---------------------------------------- [testng] [2024-12-12 03:58:34,464] [main] Total files: 19 [testng] [2024-12-12 03:58:34,464] [main] Scan time: 39.79 s (2094 ms/file) [testng] [2024-12-12 03:58:34,465] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-12 03:59:19,727] [pool-1-thread-1] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] 03:59:19,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:59:19,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:19,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-12_03-59-19.log] [testng] 03:59:19,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ae89f05 - End of configuration. [testng] [2024-12-12 03:59:22,201] [pool-1-thread-12] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] 03:59:22,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:59:22,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:22,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-12_03-59-22.log] [testng] 03:59:22,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d8e83f2 - End of configuration. [testng] [2024-12-12 03:59:24,431] [pool-1-thread-11] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] 03:59:24,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:59:24,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:24,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-12_03-59-24.log] [testng] 03:59:24,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19555bfb - End of configuration. [testng] [2024-12-12 03:59:26,540] [pool-1-thread-10] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] 03:59:26,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:59:26,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:26,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-12_03-59-26.log] [testng] 03:59:26,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@727a37 - End of configuration. [testng] [2024-12-12 03:59:29,096] [pool-1-thread-9] Initializing /data/todd/movement-1.htm: [testng] 03:59:29,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:59:29,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:29,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-12_03-59-29.log] [testng] 03:59:29,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@451660c3 - End of configuration. [testng] [2024-12-12 03:59:31,626] [pool-1-thread-8] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] 03:59:31,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:59:31,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:31,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-12_03-59-31.log] [testng] 03:59:31,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d427a9e - End of configuration. [testng] [2024-12-12 03:59:34,224] [pool-1-thread-7] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 03:59:34,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:59:34,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:34,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-12_03-59-34.log] [testng] 03:59:34,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@527d16d8 - End of configuration. [testng] [2024-12-12 03:59:36,582] [pool-1-thread-6] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] 03:59:36,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:59:36,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:36,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-12_03-59-36.log] [testng] 03:59:36,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30e384ad - End of configuration. [testng] [2024-12-12 03:59:38,720] [pool-1-thread-5] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] 03:59:38,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:59:38,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:38,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-12_03-59-38.log] [testng] 03:59:38,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bd6a55b - End of configuration. [testng] [2024-12-12 03:59:41,088] [pool-1-thread-4] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] 03:59:41,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:59:41,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:41,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-12_03-59-41.log] [testng] 03:59:41,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@92da8c3 - End of configuration. [testng] [2024-12-12 03:59:43,553] [pool-1-thread-3] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] 03:59:43,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:59:43,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:43,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-12_03-59-43.log] [testng] 03:59:43,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2db5951d - End of configuration. [testng] [2024-12-12 03:59:45,953] [pool-1-thread-2] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] 03:59:45,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:59:45,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:45,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-12_03-59-45.log] [testng] 03:59:45,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79ee3e9d - End of configuration. [testng] [2024-12-12 04:00:48,224] [pool-1-thread-1] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] [2024-12-12 04:00:50,704] [pool-1-thread-12] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] [2024-12-12 04:00:53,526] [pool-1-thread-5] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] [2024-12-12 04:01:11,948] [pool-1-thread-9] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] [2024-12-12 04:01:44,153] [pool-1-thread-6] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] [2024-12-12 04:02:28,836] [pool-1-thread-7] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] 05:00:53,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:00:53,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:53,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-12_05-00-53.log] [testng] 05:00:53,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d9bda86 - End of configuration. [testng] 05:03:57,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:03:57,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:57,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_05-03-57.log] [testng] 05:03:57,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e00ed0f - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 66 minutes 5 seconds Finished: SUCCESS