Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 288
originally caused by:
 Started by upstream project "Trigger" build number 307
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins9220375965262438731.sh
+ '[' tecan = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45535_merge_ci -v /uod/idr/repos/curated/tecan:/data -v /uod/idr-scratch/merge-ci/curated/tecan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
    [javac] 4 warnings

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 06:04:24,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 06:04:24,580 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
   [testng] 06:04:24,580 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:04:24,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:04:24,582 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 06:04:24,582 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 06:04:24,582 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 06:04:24,582 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:04:24,583 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:04:24,583 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 06:04:24,584 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 06:04:24,584 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 06:04:24,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 06:04:24,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 06:04:24,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 06:04:24,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 06:04:24,780 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 06:04:24,780 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 06:04:24,780 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 06:04:24,781 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 06:04:24,781 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
   [testng] 06:04:24,782 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
   [testng] 06:04:24,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-12 06:04:24,791] [main] java.version = 21
   [testng] 06:04:24,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 06:04:24,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:04:24,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_06-04-24.log]
   [testng] 06:04:24,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
   [testng] [2024-12-12 06:04:24,840] [main] testng.directory = /data
   [testng] [2024-12-12 06:04:24,840] [main] testng.configDirectory = /config
   [testng] [2024-12-12 06:04:24,848] [main] testng.multiplier = 1.0
   [testng] [2024-12-12 06:04:24,849] [main] testng.in-memory = false
   [testng] [2024-12-12 06:04:24,849] [main] testng.allow-missing = false
   [testng] [2024-12-12 06:04:24,849] [main] user.language = en
   [testng] [2024-12-12 06:04:24,849] [main] user.country = ${user.country}
   [testng] [2024-12-12 06:04:24,849] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-12 06:07:44,047] [main] ----------------------------------------
   [testng] [2024-12-12 06:07:44,047] [main] Total files: 170
   [testng] [2024-12-12 06:07:44,047] [main] Scan time: 199.198 s (1171 ms/file)
   [testng] [2024-12-12 06:07:44,047] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 2 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-12 06:08:18,926] [pool-1-thread-1] Initializing /data/tecan/TP-IMG-NC&TE-2 Nuclei Counting-Performance CYTO500_20190109_132904/Database/ff478f2c-4bb2-493c-a903-1dcb2a91d42d.db: 
   [testng] 06:08:18,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 06:08:18,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:08:18,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-12_06-08-18.log]
   [testng] 06:08:18,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fa7df67 - End of configuration.
   [testng] [2024-12-12 06:08:21,992] [pool-1-thread-2] Initializing /data/tecan/DryRunCellViability20181113_20181113_105038/Database/61b32f2a-0b1e-43bd-b577-969297475f12.db: 
   [testng] 06:08:21,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 06:08:21,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:08:21,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-12_06-08-21.log]
   [testng] 06:08:21,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9af7cc - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 106, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 12 minutes 59 seconds
Finished: SUCCESS