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Started by upstream project "BIOFORMATS-test-repo" build number 288 originally caused by: Started by upstream project "Trigger" build number 307 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins8968895688671325142.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45550_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 07:52:36,186 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:52:36,187 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 07:52:36,187 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:52:36,188 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:52:36,189 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:52:36,189 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:52:36,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:52:36,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:52:36,190 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:52:36,190 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:52:36,191 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:52:36,191 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:52:36,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:52:36,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:52:36,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:52:36,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:52:36,374 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:52:36,375 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:52:36,375 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:52:36,375 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:52:36,375 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 07:52:36,376 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 07:52:36,376 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-12 07:52:36,385] [main] java.version = 21 [testng] 07:52:36,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:52:36,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:36,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_07-52-36.log] [testng] 07:52:36,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-12 07:52:36,431] [main] testng.directory = /data [testng] [2024-12-12 07:52:36,431] [main] testng.configDirectory = /config [testng] [2024-12-12 07:52:36,439] [main] testng.multiplier = 1.0 [testng] [2024-12-12 07:52:36,440] [main] testng.in-memory = false [testng] [2024-12-12 07:52:36,440] [main] testng.allow-missing = false [testng] [2024-12-12 07:52:36,440] [main] user.language = en [testng] [2024-12-12 07:52:36,440] [main] user.country = ${user.country} [testng] [2024-12-12 07:52:36,440] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-12 08:03:03,626] [main] ---------------------------------------- [testng] [2024-12-12 08:03:03,627] [main] Total files: 15735 [testng] [2024-12-12 08:03:03,627] [main] Scan time: 627.186 s (39 ms/file) [testng] [2024-12-12 08:03:03,627] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-12 08:21:09,890] [pool-1-thread-1] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] 08:21:09,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:21:09,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:21:09,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-12_08-21-09.log] [testng] 08:21:09,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60ce17ae - End of configuration. [testng] [2024-12-12 08:21:24,634] [pool-1-thread-12] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 08:21:24,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:21:24,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:21:24,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-12_08-21-24.log] [testng] 08:21:24,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c028613 - End of configuration. [testng] [2024-12-12 08:21:45,057] [pool-1-thread-11] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] 08:21:45,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:21:45,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:21:45,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-12_08-21-45.log] [testng] 08:21:45,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61f761f5 - End of configuration. [testng] [2024-12-12 08:21:50,055] [pool-1-thread-10] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] 08:21:50,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:21:50,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:21:50,056 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-12_08-21-50.log] [testng] 08:21:50,056 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51137eac - End of configuration. [testng] [2024-12-12 08:22:16,310] [pool-1-thread-9] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] 08:22:16,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:22:16,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:16,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-12_08-22-16.log] [testng] 08:22:16,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a4c717f - End of configuration. [testng] [2024-12-12 08:22:19,829] [pool-1-thread-8] Initializing /data/converted/lior/live+cf5b.tif: [testng] 08:22:19,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:22:19,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:19,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-12_08-22-19.log] [testng] 08:22:19,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57e6d10c - End of configuration. [testng] [2024-12-12 08:22:23,880] [pool-1-thread-7] Initializing /data/scott/Slide133-01.tif: [testng] 08:22:23,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:22:23,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:23,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-12_08-22-23.log] [testng] 08:22:23,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55e7b925 - End of configuration. [testng] [2024-12-12 08:22:28,890] [pool-1-thread-6] Initializing /data/scott/Slide133-04.tif: [testng] 08:22:28,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:22:28,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:28,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-12_08-22-28.log] [testng] 08:22:28,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d3b5cc6 - End of configuration. [testng] [2024-12-12 08:22:33,062] [pool-1-thread-5] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] 08:22:33,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:22:33,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:33,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-12_08-22-33.log] [testng] 08:22:33,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27d6d08 - End of configuration. [testng] [2024-12-12 08:22:38,390] [pool-1-thread-4] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] 08:22:38,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:22:38,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:38,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-12_08-22-38.log] [testng] 08:22:38,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@230e5553 - End of configuration. [testng] [2024-12-12 08:22:41,110] [pool-1-thread-3] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] 08:22:41,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:22:41,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:41,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-12_08-22-41.log] [testng] 08:22:41,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e7cab10 - End of configuration. [testng] [2024-12-12 08:22:45,385] [pool-1-thread-2] Initializing /data/scott/Slide133-08.tif: [testng] 08:22:45,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:22:45,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:45,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-12_08-22-45.log] [testng] 08:22:45,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64ff2c59 - End of configuration. [testng] [2024-12-12 08:24:10,197] [pool-1-thread-11] Initializing /data/converted/michel/c.tif: [testng] [2024-12-12 08:24:16,099] [pool-1-thread-3] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-12-12 08:24:19,981] [pool-1-thread-6] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-12-12 08:24:22,978] [pool-1-thread-2] Initializing /data/converted/converted/damian.tif: [testng] [2024-12-12 08:24:33,094] [pool-1-thread-7] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-12-12 08:25:08,880] [pool-1-thread-4] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-12-12 08:25:20,551] [pool-1-thread-9] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-12-12 08:26:10,740] [pool-1-thread-8] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-12-12 08:26:31,652] [pool-1-thread-2] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-12-12 08:26:36,657] [pool-1-thread-6] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-12-12 08:27:15,571] [pool-1-thread-11] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-12-12 08:27:28,185] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-12-12 08:28:10,933] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-12-12 08:28:17,550] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-12-12 08:35:42,525] [pool-1-thread-5] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-12-12 08:37:47,618] [pool-1-thread-9] Initializing /data/scott/Slide133-11.tif: [testng] [2024-12-12 08:38:59,979] [pool-1-thread-4] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-12-12 08:39:36,659] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-12-12 08:41:03,331] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-12-12 08:43:05,905] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-12-12 08:44:00,761] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] [2024-12-12 08:44:31,631] [pool-1-thread-4] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-12-12 08:45:59,895] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-12-12 08:46:39,686] [pool-1-thread-5] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-12-12 08:47:38,341] [pool-1-thread-2] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-12-12 08:51:02,955] [pool-1-thread-11] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-12-12 08:51:54,517] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-12-12 08:55:38,820] [pool-1-thread-5] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-12-12 09:01:48,790] [pool-1-thread-11] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-12-12 09:05:40,645] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-12-12 09:08:18,078] [pool-1-thread-6] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-12-12 09:10:34,273] [pool-1-thread-12] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-12-12 09:10:43,114] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-12-12 09:19:36,631] [pool-1-thread-7] Initializing /data/converted/nicolas/image.tif: [testng] [2024-12-12 09:21:15,526] [pool-1-thread-7] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-12-12 09:28:19,599] [pool-1-thread-7] Initializing /data/converted/dietmar/137.tif: [testng] [2024-12-12 09:28:37,568] [pool-1-thread-3] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-12-12 09:29:43,096] [pool-1-thread-9] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-12-12 09:31:05,808] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-12-12 09:32:32,999] [pool-1-thread-2] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-12-12 09:33:05,950] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-12-12 09:33:38,262] [pool-1-thread-12] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-12-12 09:33:52,016] [pool-1-thread-2] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-12-12 09:34:52,815] [pool-1-thread-2] Initializing /data/converted/michel/a.tif: [testng] [2024-12-12 09:36:13,355] [pool-1-thread-2] Initializing /data/converted/sebastien/test.tif: [testng] [2024-12-12 09:36:39,536] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-12-12 09:37:07,869] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-12-12 09:44:13,288] [pool-1-thread-8] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-12-12 09:45:56,019] [pool-1-thread-8] Initializing /data/othmar/mozaic.tif: [testng] [2024-12-12 09:47:36,170] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-12-12 09:50:23,107] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-12-12 09:52:12,649] [pool-1-thread-7] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-12-12 09:55:26,107] [pool-1-thread-7] Initializing /data/converted/converted/2chz.tif: [testng] [2024-12-12 10:01:01,476] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-12-12 10:04:12,752] [pool-1-thread-8] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-12-12 10:06:24,593] [pool-1-thread-11] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-12-12 10:07:07,130] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-12-12 10:08:35,953] [pool-1-thread-5] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-12-12 10:10:09,021] [pool-1-thread-11] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-12-12 10:11:23,891] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-12-12 10:11:52,710] [pool-1-thread-2] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-12-12 10:12:11,074] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-12-12 10:13:12,742] [pool-1-thread-11] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-12-12 10:20:19,526] [pool-1-thread-11] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-12-12 10:21:29,586] [pool-1-thread-3] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-12-12 10:22:52,818] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-12-12 10:25:16,937] [pool-1-thread-6] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-12-12 10:26:31,771] [pool-1-thread-6] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-12-12 10:27:30,204] [pool-1-thread-11] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-12-12 10:28:51,257] [pool-1-thread-9] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2024-12-12 10:29:12,136] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] 10:29:50,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:29:50,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:29:50,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-12_10-29-50.log] [testng] 10:29:50,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f2223d9 - End of configuration. [testng] [2024-12-12 10:34:00,955] [pool-1-thread-5] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-12-12 10:34:27,952] [pool-1-thread-5] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-12-12 10:34:45,628] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-12-12 10:35:38,192] [pool-1-thread-5] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-12-12 10:36:39,107] [pool-1-thread-5] Initializing /data/converted/michel/d.tif: [testng] [2024-12-12 10:36:48,574] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-12-12 10:38:02,273] [pool-1-thread-5] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-12-12 10:38:52,476] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-12-12 10:41:28,466] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] 10:41:40,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:41:40,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:41:40,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-12_10-41-40.log] [testng] 10:41:40,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c8004fb - End of configuration. [testng] [2024-12-12 10:46:33,958] [pool-1-thread-5] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-12-12 10:47:30,661] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-12-12 10:47:57,486] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-12-12 10:49:21,522] [pool-1-thread-1] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-12-12 10:51:06,511] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-12-12 10:52:13,262] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-12-12 11:01:43,550] [pool-1-thread-7] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-12-12 11:03:47,618] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-12-12 11:04:57,013] [pool-1-thread-7] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-12-12 11:08:03,257] [pool-1-thread-7] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-12-12 11:08:40,908] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-12-12 11:09:52,433] [pool-1-thread-11] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-12-12 11:09:57,547] [pool-1-thread-8] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-12-12 11:10:49,260] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] 11:12:16,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:12:16,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:12:16,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-12_11-12-16.log] [testng] 11:12:16,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79369a6b - End of configuration. [testng] [2024-12-12 11:13:12,650] [pool-1-thread-1] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-12-12 11:13:18,838] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-12-12 11:16:35,027] [pool-1-thread-5] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-12-12 11:21:28,200] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-12-12 11:23:04,819] [pool-1-thread-6] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-12-12 11:23:54,568] [pool-1-thread-6] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-12-12 11:27:32,592] [pool-1-thread-3] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-12-12 11:27:45,903] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 11:30:22,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:30:22,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:22,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-12_11-30-22.log] [testng] 11:30:22,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60cc21aa - End of configuration. [testng] [2024-12-12 11:31:15,785] [pool-1-thread-4] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-12-12 11:31:45,780] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-12-12 11:32:40,087] [pool-1-thread-9] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-12-12 11:32:57,490] [pool-1-thread-4] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-12-12 11:33:19,958] [pool-1-thread-5] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-12-12 11:34:19,599] [pool-1-thread-5] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-12-12 11:35:31,815] [pool-1-thread-5] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-12-12 11:36:32,643] [pool-1-thread-5] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-12-12 11:37:17,328] [pool-1-thread-9] Initializing /data/converted/michel/e.tif: [testng] [2024-12-12 11:37:21,628] [pool-1-thread-3] Initializing /data/converted/dietmar/138.tif: [testng] [2024-12-12 11:37:25,172] [pool-1-thread-12] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] 14:36:17,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 14:36:17,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:36:17,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-12_14-36-17.log] [testng] 14:36:17,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@784d4a86 - End of configuration. [testng] 14:41:19,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 14:41:19,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:41:19,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_14-41-19.log] [testng] 14:41:19,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3310bb28 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 408 minutes 51 seconds Finished: SUCCESS