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Started by upstream project "BIOFORMATS-test-repo" build number 33 originally caused by: Started by upstream project "Trigger" build number 37 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2962709271386579512.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4558_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:39:37,639 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:39:37,641 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 02:39:37,641 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:39:37,642 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:39:37,642 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:39:37,642 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:39:37,643 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:39:37,643 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:39:37,643 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:39:37,644 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:39:37,644 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:39:37,644 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:39:37,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:39:37,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:39:37,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:39:37,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:39:37,976 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:39:37,976 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:39:37,976 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:39:37,977 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:39:37,977 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 02:39:37,977 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 02:39:37,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 334 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-14 02:39:38,014] [main] java.version = 17.0.2 [testng] 02:39:38,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:39:38,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:38,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-14_02-39-38.log] [testng] 02:39:38,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-04-14 02:39:38,129] [main] testng.directory = /data [testng] [2024-04-14 02:39:38,129] [main] testng.configDirectory = /config [testng] [2024-04-14 02:39:38,138] [main] testng.multiplier = 1.0 [testng] [2024-04-14 02:39:38,139] [main] testng.in-memory = false [testng] [2024-04-14 02:39:38,139] [main] testng.allow-missing = false [testng] [2024-04-14 02:39:38,140] [main] user.language = en [testng] [2024-04-14 02:39:38,140] [main] user.country = ${user.country} [testng] [2024-04-14 02:39:38,140] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-14 02:39:39,315] [main] ---------------------------------------- [testng] [2024-04-14 02:39:39,315] [main] Total files: 22 [testng] [2024-04-14 02:39:39,315] [main] Scan time: 1.175 s (53 ms/file) [testng] [2024-04-14 02:39:39,316] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-14 02:39:47,357] [pool-1-thread-1] Initializing /data/converted/mitosis-test.tif: [testng] 02:39:47,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:39:47,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:47,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-14_02-39-47.log] [testng] 02:39:47,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aedfeb2 - End of configuration. [testng] [2024-04-14 02:39:47,556] [pool-1-thread-12] Initializing /data/samples/TISSUE.TIF: [testng] 02:39:47,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:39:47,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:47,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-14_02-39-47.log] [testng] 02:39:47,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@230e5553 - End of configuration. [testng] [2024-04-14 02:39:47,595] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 02:39:47,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:39:47,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:47,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-14_02-39-47.log] [testng] 02:39:47,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e7cab10 - End of configuration. [testng] [2024-04-14 02:39:47,627] [pool-1-thread-10] Initializing /data/xiuwen/head2.seq: [testng] 02:39:47,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:39:47,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:47,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-14_02-39-47.log] [testng] 02:39:47,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a6bfb17 - End of configuration. [testng] [2024-04-14 02:39:47,747] [pool-1-thread-9] Initializing /data/converted/dub01.ipw: [testng] 02:39:47,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:39:47,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:47,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-14_02-39-47.log] [testng] 02:39:47,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6133f69 - End of configuration. [testng] [2024-04-14 02:39:47,784] [pool-1-thread-8] Initializing /data/converted/clown.ipw: [testng] 02:39:47,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:39:47,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:47,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-14_02-39-47.log] [testng] 02:39:47,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27f0730d - End of configuration. [testng] [2024-04-14 02:39:47,804] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 02:39:47,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:39:47,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:47,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-14_02-39-47.log] [testng] 02:39:47,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b3adad1 - End of configuration. [testng] [2024-04-14 02:39:47,836] [pool-1-thread-6] Initializing /data/converted/clown8c.seq: [testng] 02:39:47,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:39:47,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:47,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-14_02-39-47.log] [testng] 02:39:47,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@521d7542 - End of configuration. [testng] [2024-04-14 02:39:47,857] [pool-1-thread-5] Initializing /data/converted/mitosis-test.ipw: [testng] 02:39:47,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:39:47,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:47,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-14_02-39-47.log] [testng] 02:39:47,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c821a43 - End of configuration. [testng] [2024-04-14 02:39:47,904] [pool-1-thread-4] Initializing /data/converted/clown.tif: [testng] 02:39:47,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:39:47,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:47,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-14_02-39-47.log] [testng] 02:39:47,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8c1471c - End of configuration. [testng] [2024-04-14 02:39:47,921] [pool-1-thread-3] Initializing /data/converted/clown.seq: [testng] 02:39:47,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:39:47,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:47,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-14_02-39-47.log] [testng] 02:39:47,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ee5cc3c - End of configuration. [testng] [2024-04-14 02:39:47,949] [pool-1-thread-2] Initializing /data/converted/clown8c.tif: [testng] 02:39:47,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:39:47,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:47,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-14_02-39-47.log] [testng] 02:39:47,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@203e9a0 - End of configuration. [testng] [2024-04-14 02:39:49,831] [pool-1-thread-2] Initializing /data/converted/dub01.seq: [testng] [2024-04-14 02:39:49,854] [pool-1-thread-5] Initializing /data/samples/HEART.SEQ: [testng] [2024-04-14 02:39:49,875] [pool-1-thread-3] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-04-14 02:39:49,946] [pool-1-thread-4] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-04-14 02:39:49,999] [pool-1-thread-12] Initializing /data/samples/PROBE.TIF: [testng] [2024-04-14 02:39:50,020] [pool-1-thread-6] Initializing /data/converted/dub01.pic: [testng] [2024-04-14 02:39:50,056] [pool-1-thread-8] Initializing /data/converted/clown8c.ipw: [testng] [2024-04-14 02:39:50,069] [pool-1-thread-11] Initializing /data/alex/AFAset0003.ips: [testng] [2024-04-14 02:39:50,080] [pool-1-thread-7] Initializing /data/converted/mitosis-test.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 seconds Finished: SUCCESS