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Started by upstream project "BIOFORMATS-test-repo" build number 289 originally caused by: Started by upstream project "Trigger" build number 308 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins4822173323806882082.sh + '[' lim = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45600_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:25:12,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:25:12,469 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:25:12,469 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:25:12,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:25:12,470 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:25:12,470 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:25:12,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:25:12,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:25:12,471 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:25:12,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:25:12,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:25:12,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:25:12,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:25:12,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:25:12,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:25:12,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:25:12,754 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:25:12,754 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:25:12,754 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:25:12,755 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:25:12,755 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:25:12,756 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:25:12,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-13 00:25:12,766] [main] java.version = 1.8.0_342 [testng] 00:25:12,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:25:12,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:12,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_00-25-12.log] [testng] 00:25:12,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-13 00:25:12,821] [main] testng.directory = /data [testng] [2024-12-13 00:25:12,821] [main] testng.configDirectory = /config [testng] [2024-12-13 00:25:12,834] [main] testng.multiplier = 1.0 [testng] [2024-12-13 00:25:12,834] [main] testng.in-memory = false [testng] [2024-12-13 00:25:12,834] [main] testng.allow-missing = false [testng] [2024-12-13 00:25:12,834] [main] user.language = en [testng] [2024-12-13 00:25:12,834] [main] user.country = ${user.country} [testng] [2024-12-13 00:25:12,834] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-13 00:25:13,373] [main] ---------------------------------------- [testng] [2024-12-13 00:25:13,373] [main] Total files: 21 [testng] [2024-12-13 00:25:13,373] [main] Scan time: 0.539 s (25 ms/file) [testng] [2024-12-13 00:25:13,373] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-13 00:25:29,359] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:25:29,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:25:29,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:29,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-13_00-25-29.log] [testng] 00:25:29,360 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f58757c - End of configuration. [testng] [2024-12-13 00:25:30,191] [pool-1-thread-12] Initializing /data/venu/Kontrolle0016.lim: [testng] 00:25:30,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:25:30,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:30,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-13_00-25-30.log] [testng] 00:25:30,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b05e73c - End of configuration. [testng] [2024-12-13 00:25:30,719] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:25:30,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:25:30,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:30,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-13_00-25-30.log] [testng] 00:25:30,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b0d3d5 - End of configuration. [testng] [2024-12-13 00:25:31,369] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim: [testng] 00:25:31,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:25:31,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:31,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-13_00-25-31.log] [testng] 00:25:31,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24c1092 - End of configuration. [testng] [2024-12-13 00:25:31,912] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim: [testng] 00:25:31,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:25:31,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:31,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-13_00-25-31.log] [testng] 00:25:31,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@771160ed - End of configuration. [testng] [2024-12-13 00:25:32,666] [pool-1-thread-8] Initializing /data/venu/Kontrolle0018.lim: [testng] 00:25:32,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:25:32,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:32,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-13_00-25-32.log] [testng] 00:25:32,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@375e13e - End of configuration. [testng] [2024-12-13 00:25:33,849] [pool-1-thread-7] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:25:33,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:25:33,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:33,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-13_00-25-33.log] [testng] 00:25:33,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b9039e0 - End of configuration. [testng] [2024-12-13 00:25:34,555] [pool-1-thread-6] Initializing /data/venu/Kontrolle0008.lim: [testng] 00:25:34,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:25:34,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:34,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-13_00-25-34.log] [testng] 00:25:34,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@779f408e - End of configuration. [testng] [2024-12-13 00:25:35,371] [pool-1-thread-5] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:25:35,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:25:35,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:35,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-13_00-25-35.log] [testng] 00:25:35,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@647953af - End of configuration. [testng] [2024-12-13 00:25:36,304] [pool-1-thread-4] Initializing /data/venu/Kontrolle0004.lim: [testng] 00:25:36,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:25:36,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:36,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-13_00-25-36.log] [testng] 00:25:36,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d0cbf14 - End of configuration. [testng] [2024-12-13 00:25:36,745] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:25:36,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:25:36,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:36,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_00-25-36.log] [testng] 00:25:36,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bb9dc74 - End of configuration. [testng] [2024-12-13 00:25:37,160] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:25:37,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:25:37,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:37,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_00-25-37.log] [testng] 00:25:37,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47f3d9c0 - End of configuration. [testng] [2024-12-13 00:25:46,218] [pool-1-thread-4] Initializing /data/venu/Kontrolle0020.lim: [testng] [2024-12-13 00:25:46,836] [pool-1-thread-11] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-12-13 00:25:47,469] [pool-1-thread-7] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-12-13 00:25:48,032] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim: [testng] [2024-12-13 00:25:48,538] [pool-1-thread-3] Initializing /data/venu/Kontrolle0017.lim: [testng] [2024-12-13 00:25:49,097] [pool-1-thread-8] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-12-13 00:25:49,606] [pool-1-thread-9] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-12-13 00:25:51,950] [pool-1-thread-1] Initializing /data/venu/Kontrolle0012.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 48 seconds Finished: SUCCESS