![[Jenkins]](/jenkins/static/c7b3cdfa/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 289 originally caused by: Started by upstream project "Trigger" build number 308 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins8648880614655972497.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45623_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:52:58,130 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:52:58,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:52:58,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:52:58,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:52:58,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:52:58,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:52:58,133 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:52:58,133 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:52:58,134 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:52:58,134 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:52:58,134 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:52:58,134 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:52:58,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:52:58,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:52:58,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:52:58,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:52:58,392 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:52:58,392 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:52:58,392 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:52:58,393 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:52:58,393 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:52:58,394 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:52:58,394 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 260 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-13 00:52:58,403] [main] java.version = 1.8.0_342 [testng] 00:52:58,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:52:58,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:58,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_00-52-58.log] [testng] 00:52:58,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-13 00:52:58,454] [main] testng.directory = /data [testng] [2024-12-13 00:52:58,454] [main] testng.configDirectory = /config [testng] [2024-12-13 00:52:58,466] [main] testng.multiplier = 1.0 [testng] [2024-12-13 00:52:58,466] [main] testng.in-memory = false [testng] [2024-12-13 00:52:58,466] [main] testng.allow-missing = false [testng] [2024-12-13 00:52:58,466] [main] user.language = en [testng] [2024-12-13 00:52:58,466] [main] user.country = ${user.country} [testng] [2024-12-13 00:52:58,466] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-13 00:52:59,389] [main] ---------------------------------------- [testng] [2024-12-13 00:52:59,389] [main] Total files: 21 [testng] [2024-12-13 00:52:59,389] [main] Scan time: 0.923 s (43 ms/file) [testng] [2024-12-13 00:52:59,389] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-13 00:53:08,447] [pool-1-thread-1] Initializing /data/samples/UCM8.TGA: [testng] 00:53:08,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:53:08,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:08,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-13_00-53-08.log] [testng] 00:53:08,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e43d9fd - End of configuration. [testng] [2024-12-13 00:53:08,727] [pool-1-thread-12] Initializing /data/samples/XING_B24.TGA: [testng] 00:53:08,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:53:08,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:08,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-13_00-53-08.log] [testng] 00:53:08,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38a49bf8 - End of configuration. [testng] [2024-12-13 00:53:09,051] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 00:53:09,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:53:09,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:09,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-13_00-53-09.log] [testng] 00:53:09,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c641e64 - End of configuration. [testng] [2024-12-13 00:53:09,345] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 00:53:09,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:53:09,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:09,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-13_00-53-09.log] [testng] 00:53:09,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@588bd208 - End of configuration. [testng] [2024-12-13 00:53:09,808] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:53:09,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:53:09,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:09,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-13_00-53-09.log] [testng] 00:53:09,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4775441e - End of configuration. [testng] [2024-12-13 00:53:10,173] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: [testng] 00:53:10,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:53:10,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:10,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-13_00-53-10.log] [testng] 00:53:10,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4aa3fe2a - End of configuration. [testng] [2024-12-13 00:53:10,470] [pool-1-thread-7] Initializing /data/samples/CTC16.TGA: [testng] 00:53:10,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:53:10,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:10,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-13_00-53-10.log] [testng] 00:53:10,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29e45f2c - End of configuration. [testng] [2024-12-13 00:53:10,752] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA: [testng] 00:53:10,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:53:10,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:10,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-13_00-53-10.log] [testng] 00:53:10,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22fcde77 - End of configuration. [testng] [2024-12-13 00:53:11,041] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA: [testng] 00:53:11,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:53:11,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:11,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-13_00-53-11.log] [testng] 00:53:11,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e51c0b3 - End of configuration. [testng] [2024-12-13 00:53:11,498] [pool-1-thread-4] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:53:11,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:53:11,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:11,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-13_00-53-11.log] [testng] 00:53:11,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1853b49a - End of configuration. [testng] [2024-12-13 00:53:11,854] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA: [testng] 00:53:11,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:53:11,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:11,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_00-53-11.log] [testng] 00:53:11,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ea044ae - End of configuration. [testng] [2024-12-13 00:53:12,246] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] 00:53:12,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:53:12,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:12,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_00-53-12.log] [testng] 00:53:12,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17a4dafa - End of configuration. [testng] [2024-12-13 00:53:18,189] [pool-1-thread-9] Initializing /data/samples/CTC24.TGA: [testng] [2024-12-13 00:53:18,723] [pool-1-thread-5] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-12-13 00:53:19,192] [pool-1-thread-7] Initializing /data/samples/CBW8.TGA: [testng] [2024-12-13 00:53:20,050] [pool-1-thread-1] Initializing /data/samples/XING_B32.TGA: [testng] [2024-12-13 00:53:20,736] [pool-1-thread-10] Initializing /data/samples/UTC24.TGA: [testng] [2024-12-13 00:53:21,290] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA: [testng] [2024-12-13 00:53:21,895] [pool-1-thread-6] Initializing /data/samples/UBW8.TGA: [testng] [2024-12-13 00:53:22,343] [pool-1-thread-12] Initializing /data/samples/XING_T32.TGA: [testng] [2024-12-13 00:53:22,980] [pool-1-thread-11] Initializing /data/samples/UTC16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 seconds Finished: SUCCESS