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Started by upstream project "BIOFORMATS-test-repo" build number 289 originally caused by: Started by upstream project "Trigger" build number 308 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1681641371760952861.sh + '[' canon = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45629_merge_ci -v /uod/idr/repos/curated/canon:/data -v /uod/idr-scratch/merge-ci/curated/canon:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:06:35,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:06:35,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:06:35,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:06:35,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:06:35,444 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:06:35,444 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:06:35,444 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:06:35,444 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:06:35,444 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 01:06:35,445 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 01:06:35,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 542 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-13 01:06:35,460] [main] java.version = 1.8.0_342 [testng] 01:06:35,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:06:35,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:35,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_01-06-35.log] [testng] 01:06:35,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-13 01:06:35,535] [main] testng.directory = /data [testng] [2024-12-13 01:06:35,535] [main] testng.configDirectory = /config [testng] [2024-12-13 01:06:35,550] [main] testng.multiplier = 1.0 [testng] [2024-12-13 01:06:35,551] [main] testng.in-memory = false [testng] [2024-12-13 01:06:35,551] [main] testng.allow-missing = false [testng] [2024-12-13 01:06:35,551] [main] user.language = en [testng] [2024-12-13 01:06:35,551] [main] user.country = ${user.country} [testng] [2024-12-13 01:06:35,551] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-13 01:07:05,210] [main] ---------------------------------------- [testng] [2024-12-13 01:07:05,210] [main] Total files: 13 [testng] [2024-12-13 01:07:05,210] [main] Scan time: 29.658 s (2281 ms/file) [testng] [2024-12-13 01:07:05,210] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-13 01:07:43,322] [pool-1-thread-1] Initializing /data/cls/_N5Y0001.CR2: [testng] 01:07:43,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:07:43,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:43,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-13_01-07-43.log] [testng] 01:07:43,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79a6ece0 - End of configuration. [testng] [2024-12-13 01:07:46,162] [pool-1-thread-12] Initializing /data/pete/DNG-CRW.CRW: [testng] 01:07:46,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:07:46,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:46,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-13_01-07-46.log] [testng] 01:07:46,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f622c5b - End of configuration. [testng] [2024-12-13 01:07:48,356] [pool-1-thread-11] Initializing /data/pete/DNG-THM.THM: [testng] 01:07:48,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:07:48,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:48,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-13_01-07-48.log] [testng] 01:07:48,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65c291b7 - End of configuration. [testng] [2024-12-13 01:07:50,325] [pool-1-thread-10] Initializing /data/pete/Raw-THM.THM: [testng] 01:07:50,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:07:50,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:50,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-13_01-07-50.log] [testng] 01:07:50,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72bffadb - End of configuration. [testng] [2024-12-13 01:07:54,277] [pool-1-thread-9] Initializing /data/pete/Raw-CRW.CRW: [testng] 01:07:54,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:07:54,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:54,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-13_01-07-54.log] [testng] 01:07:54,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74a56c4e - End of configuration. [testng] [2024-12-13 01:07:58,920] [pool-1-thread-8] Initializing /data/kinor/2013_03_08_0808.CR2: [testng] 01:07:58,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:07:58,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:58,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-13_01-07-58.log] [testng] 01:07:58,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15cd7275 - End of configuration. [testng] [2024-12-13 01:08:01,220] [pool-1-thread-7] Initializing /data/pete/DNG-WAV.WAV: [testng] 01:08:01,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:08:01,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:01,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-13_01-08-01.log] [testng] 01:08:01,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51367b68 - End of configuration. [testng] [2024-12-13 01:08:03,593] [pool-1-thread-6] Initializing /data/pete/Learning to Fly.JPG: [testng] 01:08:03,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:08:03,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:03,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-13_01-08-03.log] [testng] 01:08:03,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52d6e3bb - End of configuration. [testng] [2024-12-13 01:08:04,156] [pool-1-thread-5] Initializing /data/pete/Raw-JPG.JPG: [testng] 01:08:04,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:08:04,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:04,157 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-13_01-08-04.log] [testng] 01:08:04,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e4d331b - End of configuration. [testng] [2024-12-13 01:08:07,730] [pool-1-thread-4] Initializing /data/pete/DNG-JPG.JPG: [testng] 01:08:07,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:08:07,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:07,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-13_01-08-07.log] [testng] 01:08:07,732 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22fd74e0 - End of configuration. [testng] [2024-12-13 01:08:10,157] [pool-1-thread-3] Initializing /data/pete/DNG-CR2.CR2: [testng] 01:08:10,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:08:10,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:10,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_01-08-10.log] [testng] 01:08:10,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cc6b479 - End of configuration. [testng] [2024-12-13 01:08:11,820] [pool-1-thread-2] Initializing /data/pete/Raw-CR2.CR2: [testng] 01:08:11,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:08:11,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:11,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_01-08-11.log] [testng] 01:08:11,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2872b4d5 - End of configuration. [testng] [2024-12-13 01:08:32,343] [pool-1-thread-6] Initializing /data/pete/Raw-WAV.WAV: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 26 seconds Finished: SUCCESS