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Started by upstream project "BIOFORMATS-test-repo" build number 289 originally caused by: Started by upstream project "Trigger" build number 308 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins2189712071507032938.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45636_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:40:20,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:40:20,162 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:40:20,162 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:40:20,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:40:20,164 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:40:20,164 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:40:20,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:40:20,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:40:20,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:40:20,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:40:20,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:40:20,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:40:20,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:40:20,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:40:20,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:40:20,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:40:20,429 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:40:20,429 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:40:20,429 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:40:20,430 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:40:20,430 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:40:20,431 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:40:20,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-13 01:40:20,441] [main] java.version = 1.8.0_342 [testng] 01:40:20,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:40:20,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:20,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_01-40-20.log] [testng] 01:40:20,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-13 01:40:20,493] [main] testng.directory = /data [testng] [2024-12-13 01:40:20,493] [main] testng.configDirectory = /config [testng] [2024-12-13 01:40:20,505] [main] testng.multiplier = 1.0 [testng] [2024-12-13 01:40:20,505] [main] testng.in-memory = false [testng] [2024-12-13 01:40:20,506] [main] testng.allow-missing = false [testng] [2024-12-13 01:40:20,506] [main] user.language = en [testng] [2024-12-13 01:40:20,506] [main] user.country = ${user.country} [testng] [2024-12-13 01:40:20,506] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-13 01:40:21,222] [main] ---------------------------------------- [testng] [2024-12-13 01:40:21,223] [main] Total files: 25 [testng] [2024-12-13 01:40:21,223] [main] Scan time: 0.716 s (28 ms/file) [testng] [2024-12-13 01:40:21,223] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-13 01:40:40,879] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:40:40,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:40:40,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:40,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-13_01-40-40.log] [testng] 01:40:40,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@700c4ea2 - End of configuration. [testng] [2024-12-13 01:40:41,593] [pool-1-thread-12] Initializing /data/jqd/mire32.pict: [testng] 01:40:41,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:40:41,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:41,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-13_01-40-41.log] [testng] 01:40:41,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f938b7c - End of configuration. [testng] [2024-12-13 01:40:42,276] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 01:40:42,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:40:42,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:42,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-13_01-40-42.log] [testng] 01:40:42,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56412b7f - End of configuration. [testng] [2024-12-13 01:40:42,959] [pool-1-thread-10] Initializing /data/misc/planet2.pict: [testng] 01:40:42,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:40:42,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:42,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-13_01-40-42.log] [testng] 01:40:42,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1446cfdb - End of configuration. [testng] [2024-12-13 01:40:43,679] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 01:40:43,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:40:43,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:43,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-13_01-40-43.log] [testng] 01:40:43,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5293e479 - End of configuration. [testng] [2024-12-13 01:40:44,784] [pool-1-thread-8] Initializing /data/misc/planet.png: [testng] 01:40:44,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:40:44,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:44,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-13_01-40-44.log] [testng] 01:40:44,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@609a802b - End of configuration. [testng] [2024-12-13 01:40:44,902] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] 01:40:44,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:40:44,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:44,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-13_01-40-44.log] [testng] 01:40:44,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d297ecb - End of configuration. [testng] [2024-12-13 01:40:46,217] [pool-1-thread-6] Initializing /data/brian/images/RED.PCT: [testng] 01:40:46,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:40:46,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:46,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-13_01-40-46.log] [testng] 01:40:46,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@551ff219 - End of configuration. [testng] [2024-12-13 01:40:47,222] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32.pct: [testng] 01:40:47,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:40:47,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:47,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-13_01-40-47.log] [testng] 01:40:47,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c7bd76c - End of configuration. [testng] [2024-12-13 01:40:48,240] [pool-1-thread-4] Initializing /data/misc/swlogo.pict: [testng] 01:40:48,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:40:48,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:48,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-13_01-40-48.log] [testng] 01:40:48,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6859ccdf - End of configuration. [testng] [2024-12-13 01:40:49,176] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 01:40:49,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:40:49,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:49,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_01-40-49.log] [testng] 01:40:49,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d2e63b0 - End of configuration. [testng] [2024-12-13 01:40:50,079] [pool-1-thread-2] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:40:50,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:40:50,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:50,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_01-40-50.log] [testng] 01:40:50,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39c1f8e6 - End of configuration. [testng] [2024-12-13 01:40:55,539] [pool-1-thread-8] Initializing /data/brian/images/BLK.PCT: [testng] [2024-12-13 01:40:59,489] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-12-13 01:41:00,265] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT: [testng] [2024-12-13 01:41:00,996] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-12-13 01:41:01,828] [pool-1-thread-5] Initializing /data/brian/images/YEL.PCT: [testng] [2024-12-13 01:41:02,945] [pool-1-thread-7] Initializing /data/misc/planet.pict: [testng] [2024-12-13 01:41:03,979] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-12-13 01:41:04,938] [pool-1-thread-10] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-12-13 01:41:05,617] [pool-1-thread-1] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-12-13 01:41:06,493] [pool-1-thread-2] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-12-13 01:41:07,386] [pool-1-thread-9] Initializing /data/jqd/mireSixteen.pict: [testng] [2024-12-13 01:41:08,343] [pool-1-thread-6] Initializing /data/brian/images/BLU.PCT: [testng] [2024-12-13 01:41:13,564] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 7 seconds Finished: SUCCESS