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Started by upstream project "BIOFORMATS-test-repo" build number 289 originally caused by: Started by upstream project "Trigger" build number 308 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins13188210259307242516.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45741_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:19:56,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:19:56,560 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 09:19:56,560 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:19:56,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:19:56,561 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:19:56,561 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:19:56,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:19:56,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:19:56,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:19:56,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:19:56,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:19:56,563 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:19:56,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:19:56,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:19:56,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:19:56,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:19:56,819 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:19:56,819 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:19:56,819 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:19:56,820 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:19:56,820 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 09:19:56,821 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 09:19:56,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-13 09:19:56,830] [main] java.version = 1.8.0_342 [testng] 09:19:56,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:19:56,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:56,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_09-19-56.log] [testng] 09:19:56,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-13 09:19:56,882] [main] testng.directory = /data [testng] [2024-12-13 09:19:56,882] [main] testng.configDirectory = /config [testng] [2024-12-13 09:19:56,895] [main] testng.multiplier = 1.0 [testng] [2024-12-13 09:19:56,895] [main] testng.in-memory = false [testng] [2024-12-13 09:19:56,895] [main] testng.allow-missing = false [testng] [2024-12-13 09:19:56,895] [main] user.language = en [testng] [2024-12-13 09:19:56,895] [main] user.country = ${user.country} [testng] [2024-12-13 09:19:56,895] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-13 09:20:32,452] [main] ---------------------------------------- [testng] [2024-12-13 09:20:32,452] [main] Total files: 31 [testng] [2024-12-13 09:20:32,452] [main] Scan time: 35.557 s (1147 ms/file) [testng] [2024-12-13 09:20:32,452] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-13 09:21:17,019] [pool-1-thread-1] Initializing /data/vikram/Captured 3.jp2: [testng] 09:21:17,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:21:17,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:17,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-13_09-21-17.log] [testng] 09:21:17,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6da5904d - End of configuration. [testng] [2024-12-13 09:21:18,231] [pool-1-thread-12] Initializing /data/vikram/Captured 5.jp2: [testng] 09:21:18,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:21:18,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:18,232 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-13_09-21-18.log] [testng] 09:21:18,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@606cbef5 - End of configuration. [testng] [2024-12-13 09:21:19,327] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2: [testng] 09:21:19,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:21:19,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:19,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-13_09-21-19.log] [testng] 09:21:19,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@514eeb34 - End of configuration. [testng] [2024-12-13 09:21:20,477] [pool-1-thread-10] Initializing /data/david/000000_000001.jpx: [testng] 09:21:20,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:21:20,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:20,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-13_09-21-20.log] [testng] 09:21:20,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28ccb1ef - End of configuration. [testng] [2024-12-13 09:21:21,648] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2: [testng] 09:21:21,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:21:21,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:21,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-13_09-21-21.log] [testng] 09:21:21,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fe13eba - End of configuration. [testng] [2024-12-13 09:21:22,689] [pool-1-thread-8] Initializing /data/vikram/Captured 4.jp2: [testng] 09:21:22,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:21:22,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:22,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-13_09-21-22.log] [testng] 09:21:22,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77a6eac7 - End of configuration. [testng] [2024-12-13 09:21:24,072] [pool-1-thread-7] Initializing /data/venu/Multichannel 3a.jpg: [testng] 09:21:24,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:21:24,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:24,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-13_09-21-24.log] [testng] 09:21:24,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30a8d52a - End of configuration. [testng] [2024-12-13 09:21:24,354] [pool-1-thread-6] Initializing /data/frans/flower.jp2: [testng] 09:21:24,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:21:24,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:24,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-13_09-21-24.log] [testng] 09:21:24,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cd9a676 - End of configuration. [testng] [2024-12-13 09:21:25,332] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jp2: [testng] 09:21:25,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:21:25,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:25,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-13_09-21-25.log] [testng] 09:21:25,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72aa6e4c - End of configuration. [testng] [2024-12-13 09:21:26,259] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jbig: [testng] 09:21:26,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:21:26,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:26,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-13_09-21-26.log] [testng] 09:21:26,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@560a232e - End of configuration. [testng] [2024-12-13 09:21:29,181] [pool-1-thread-3] Initializing /data/aryeh/flour 12.jp2: [testng] 09:21:29,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:21:29,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:29,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_09-21-29.log] [testng] 09:21:29,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f48f184 - End of configuration. [testng] [2024-12-13 09:21:30,311] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 09:21:30,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:21:30,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:30,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_09-21-30.log] [testng] 09:21:30,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@479265c0 - End of configuration. [testng] [2024-12-13 09:21:41,001] [pool-1-thread-7] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-12-13 09:21:43,143] [pool-1-thread-5] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-12-13 09:21:44,367] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-12-13 09:21:45,980] [pool-1-thread-3] Initializing /data/misc/clown-rgb.jpc: [testng] [2024-12-13 09:21:47,072] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-12-13 09:21:48,066] [pool-1-thread-12] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-12-13 09:21:51,118] [pool-1-thread-10] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-12-13 09:21:52,272] [pool-1-thread-4] Initializing /data/big-images/2kx2k.jpf: [testng] [2024-12-13 09:21:57,541] [pool-1-thread-2] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-12-13 09:22:00,064] [pool-1-thread-3] Initializing /data/kraig/head.jp2: [testng] [2024-12-13 09:22:01,647] [pool-1-thread-11] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-12-13 09:22:02,763] [pool-1-thread-5] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-12-13 09:22:04,109] [pool-1-thread-6] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-12-13 09:22:12,823] [pool-1-thread-3] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2024-12-13 09:22:14,430] [pool-1-thread-4] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-12-13 09:22:15,666] [pool-1-thread-8] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-12-13 09:22:17,668] [pool-1-thread-11] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-12-13 09:22:22,052] [pool-1-thread-10] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 minutes 47 seconds Finished: SUCCESS