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Started by upstream project "BIOFORMATS-test-repo" build number 289 originally caused by: Started by upstream project "Trigger" build number 308 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins13759303844964014807.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45743_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:32:41,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:32:41,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 09:32:41,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:32:41,046 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:32:41,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:32:41,047 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:32:41,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:32:41,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:32:41,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:32:41,048 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:32:41,048 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:32:41,048 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:32:41,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:32:41,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:32:41,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:32:41,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:32:41,291 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:32:41,292 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:32:41,292 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:32:41,292 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:32:41,292 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 09:32:41,293 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 09:32:41,293 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 246 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-13 09:32:41,302] [main] java.version = 1.8.0_342 [testng] 09:32:41,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:32:41,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:32:41,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_09-32-41.log] [testng] 09:32:41,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-13 09:32:41,352] [main] testng.directory = /data [testng] [2024-12-13 09:32:41,352] [main] testng.configDirectory = /config [testng] [2024-12-13 09:32:41,364] [main] testng.multiplier = 1.0 [testng] [2024-12-13 09:32:41,364] [main] testng.in-memory = false [testng] [2024-12-13 09:32:41,364] [main] testng.allow-missing = false [testng] [2024-12-13 09:32:41,364] [main] user.language = en [testng] [2024-12-13 09:32:41,365] [main] user.country = ${user.country} [testng] [2024-12-13 09:32:41,365] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-13 09:32:51,631] [main] ---------------------------------------- [testng] [2024-12-13 09:32:51,632] [main] Total files: 22 [testng] [2024-12-13 09:32:51,632] [main] Scan time: 10.266 s (466 ms/file) [testng] [2024-12-13 09:32:51,632] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-13 09:33:19,916] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 09:33:19,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:33:19,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:19,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-13_09-33-19.log] [testng] 09:33:19,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fd40383 - End of configuration. [testng] [2024-12-13 09:33:20,613] [pool-1-thread-12] Initializing /data/converted/clown8c.tif: [testng] 09:33:20,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:33:20,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:20,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-13_09-33-20.log] [testng] 09:33:20,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40fd65a4 - End of configuration. [testng] [2024-12-13 09:33:22,203] [pool-1-thread-11] Initializing /data/samples/TISSUE.TIF: [testng] 09:33:22,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:33:22,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:22,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-13_09-33-22.log] [testng] 09:33:22,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68a14e0b - End of configuration. [testng] [2024-12-13 09:33:23,731] [pool-1-thread-10] Initializing /data/converted/dub01.seq: [testng] 09:33:23,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:33:23,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:23,732 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-13_09-33-23.log] [testng] 09:33:23,732 |-INFO in ch.qos.logback.core.sift.SiftProcessor@473475b4 - End of configuration. [testng] [2024-12-13 09:33:24,351] [pool-1-thread-9] Initializing /data/xiuwen/head2.seq: [testng] 09:33:24,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:33:24,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:24,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-13_09-33-24.log] [testng] 09:33:24,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14685ee8 - End of configuration. [testng] [2024-12-13 09:33:25,130] [pool-1-thread-8] Initializing /data/samples/PROBE.TIF: [testng] 09:33:25,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:33:25,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:25,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-13_09-33-25.log] [testng] 09:33:25,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d9b10d8 - End of configuration. [testng] [2024-12-13 09:33:26,421] [pool-1-thread-7] Initializing /data/converted/clown.ipw: [testng] 09:33:26,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:33:26,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:26,422 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-13_09-33-26.log] [testng] 09:33:26,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38df8878 - End of configuration. [testng] [2024-12-13 09:33:27,409] [pool-1-thread-6] Initializing /data/samples/HEART.SEQ: [testng] 09:33:27,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:33:27,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:27,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-13_09-33-27.log] [testng] 09:33:27,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@464722fc - End of configuration. [testng] [2024-12-13 09:33:28,524] [pool-1-thread-5] Initializing /data/converted/mitosis-test.seq: [testng] 09:33:28,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:33:28,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:28,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-13_09-33-28.log] [testng] 09:33:28,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47561006 - End of configuration. [testng] [2024-12-13 09:33:29,435] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 09:33:29,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:33:29,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:29,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-13_09-33-29.log] [testng] 09:33:29,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cf23374 - End of configuration. [testng] [2024-12-13 09:33:30,070] [pool-1-thread-3] Initializing /data/converted/mitosis-test.tif: [testng] 09:33:30,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:33:30,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:30,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_09-33-30.log] [testng] 09:33:30,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f44bb33 - End of configuration. [testng] [2024-12-13 09:33:31,885] [pool-1-thread-2] Initializing /data/converted/clown.tif: [testng] 09:33:31,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:33:31,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:31,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_09-33-31.log] [testng] 09:33:31,887 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b99a4c1 - End of configuration. [testng] [2024-12-13 09:33:42,310] [pool-1-thread-7] Initializing /data/converted/clown.seq: [testng] [2024-12-13 09:33:43,647] [pool-1-thread-6] Initializing /data/converted/clown8c.seq: [testng] [2024-12-13 09:33:45,187] [pool-1-thread-2] Initializing /data/converted/dub01.ipw: [testng] [2024-12-13 09:33:46,041] [pool-1-thread-4] Initializing /data/alex/AFAset0003.ips: [testng] [2024-12-13 09:33:46,938] [pool-1-thread-10] Initializing /data/converted/dub01.pic: [testng] [2024-12-13 09:33:47,561] [pool-1-thread-8] Initializing /data/converted/clown8c.ipw: [testng] [2024-12-13 09:33:48,420] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-12-13 09:33:50,947] [pool-1-thread-1] Initializing /data/converted/mitosis-test.ipw: [testng] [2024-12-13 09:33:54,039] [pool-1-thread-9] Initializing /data/samples/FLDUAL.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 9 seconds Finished: SUCCESS