![[Jenkins]](/jenkins/static/d8ca237c/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 290 originally caused by: Started by upstream project "Trigger" build number 309 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins5604686845165522338.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45883_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 06:47:29,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:47:29,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 06:47:29,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:47:29,293 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:47:29,294 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:47:29,294 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:47:29,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:47:29,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:47:29,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:47:29,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:47:29,296 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:47:29,296 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:47:29,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:47:29,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:47:29,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:47:29,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:47:29,496 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:47:29,496 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:47:29,496 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:47:29,497 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:47:29,497 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 06:47:29,498 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 06:47:29,498 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-14 06:47:29,506] [main] java.version = 11.0.16 [testng] 06:47:29,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:47:29,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:29,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-14_06-47-29.log] [testng] 06:47:29,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-14 06:47:29,553] [main] testng.directory = /data [testng] [2024-12-14 06:47:29,554] [main] testng.configDirectory = /config [testng] [2024-12-14 06:47:29,564] [main] testng.multiplier = 1.0 [testng] [2024-12-14 06:47:29,565] [main] testng.in-memory = false [testng] [2024-12-14 06:47:29,565] [main] testng.allow-missing = false [testng] [2024-12-14 06:47:29,565] [main] user.language = en [testng] [2024-12-14 06:47:29,565] [main] user.country = ${user.country} [testng] [2024-12-14 06:47:29,565] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-14 06:47:36,443] [main] ---------------------------------------- [testng] [2024-12-14 06:47:36,443] [main] Total files: 32 [testng] [2024-12-14 06:47:36,443] [main] Scan time: 6.878 s (214 ms/file) [testng] [2024-12-14 06:47:36,443] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-14 06:48:41,694] [pool-1-thread-1] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] 06:48:41,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:48:41,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:48:41,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-14_06-48-41.log] [testng] 06:48:41,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37035ab6 - End of configuration. [testng] [2024-12-14 06:48:45,844] [pool-1-thread-12] Initializing /data/keith/test.1sc: [testng] 06:48:45,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:48:45,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:48:45,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-14_06-48-45.log] [testng] 06:48:45,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ff798 - End of configuration. [testng] [2024-12-14 06:48:47,015] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] 06:48:47,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:48:47,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:48:47,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-14_06-48-47.log] [testng] 06:48:47,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f487bcc - End of configuration. [testng] [2024-12-14 06:48:51,114] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] 06:48:51,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:48:51,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:48:51,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-14_06-48-51.log] [testng] 06:48:51,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@509d8d7d - End of configuration. [testng] [2024-12-14 06:48:52,303] [pool-1-thread-9] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] 06:48:52,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:48:52,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:48:52,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-14_06-48-52.log] [testng] 06:48:52,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@174bfad0 - End of configuration. [testng] [2024-12-14 06:48:53,497] [pool-1-thread-8] Initializing /data/samples/Criterion.1sc: [testng] 06:48:53,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:48:53,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:48:53,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-14_06-48-53.log] [testng] 06:48:53,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57b0bcdf - End of configuration. [testng] [2024-12-14 06:48:54,630] [pool-1-thread-7] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 06:48:54,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:48:54,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:48:54,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-14_06-48-54.log] [testng] 06:48:54,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a075a73 - End of configuration. [testng] [2024-12-14 06:48:55,821] [pool-1-thread-6] Initializing /data/david/Opened in imageJ.tiff: [testng] 06:48:55,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:48:55,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:48:55,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-14_06-48-55.log] [testng] 06:48:55,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5edd75f9 - End of configuration. [testng] [2024-12-14 06:49:00,032] [pool-1-thread-5] Initializing /data/adrian/test_img.1sc: [testng] 06:49:00,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:49:00,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:49:00,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-14_06-49-00.log] [testng] 06:49:00,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@518031dc - End of configuration. [testng] [2024-12-14 06:49:01,239] [pool-1-thread-4] Initializing /data/qa-29469/bad2.1sc: [testng] 06:49:01,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:49:01,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:49:01,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-14_06-49-01.log] [testng] 06:49:01,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71e3f986 - End of configuration. [testng] [2024-12-14 06:49:02,472] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 06:49:02,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:49:02,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:49:02,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-14_06-49-02.log] [testng] 06:49:02,474 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cf71a67 - End of configuration. [testng] [2024-12-14 06:49:08,729] [pool-1-thread-2] Initializing /data/qa-29459/bad.1sc: [testng] 06:49:08,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:49:08,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:49:08,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-14_06-49-08.log] [testng] 06:49:08,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dfefe07 - End of configuration. [testng] [2024-12-14 06:49:21,921] [pool-1-thread-12] Initializing /data/geert/good example1.1sc: [testng] [2024-12-14 06:49:23,526] [pool-1-thread-7] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2024-12-14 06:49:25,000] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2024-12-14 06:49:29,599] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2024-12-14 06:49:35,358] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2024-12-14 06:49:40,221] [pool-1-thread-5] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-12-14 06:49:41,326] [pool-1-thread-9] Initializing /data/geert/bad example1.1sc: [testng] [2024-12-14 06:49:42,463] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2024-12-14 06:49:52,901] [pool-1-thread-5] Initializing /data/keith/pg020410saur3.1sc: [testng] [2024-12-14 06:49:54,359] [pool-1-thread-7] Initializing /data/qa-29459/bad.jpg: [testng] [2024-12-14 06:49:54,805] [pool-1-thread-9] Initializing /data/keith/test2.1sc: [testng] [2024-12-14 06:49:56,067] [pool-1-thread-12] Initializing /data/qa-29469/bad3.1sc: [testng] [2024-12-14 06:49:57,278] [pool-1-thread-10] Initializing /data/keith/PF020328saur v3.1sc: [testng] [2024-12-14 06:49:58,474] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2024-12-14 06:49:59,957] [pool-1-thread-3] Initializing /data/samples/imagesEight.1sc: [testng] [2024-12-14 06:50:01,262] [pool-1-thread-1] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-12-14 06:50:01,720] [pool-1-thread-11] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2024-12-14 06:50:08,665] [pool-1-thread-5] Initializing /data/geert/bad example1.jpg: [testng] [2024-12-14 06:50:09,154] [pool-1-thread-7] Initializing /data/qa-29469/good.1sc: [testng] [2024-12-14 06:50:10,352] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 55 seconds Finished: SUCCESS