![[Jenkins]](/jenkins/static/d8ca237c/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 290 originally caused by: Started by upstream project "Trigger" build number 309 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins3706986650172454546.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45907_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 08:54:46,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:54:46,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 08:54:46,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:54:46,849 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:54:46,850 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:54:46,850 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:54:46,850 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:54:46,850 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:54:46,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:54:46,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:54:46,852 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:54:46,852 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:54:47,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:54:47,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:54:47,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:54:47,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:54:47,035 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:54:47,035 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:54:47,035 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:54:47,036 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:54:47,036 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 08:54:47,036 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 08:54:47,036 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-14 08:54:47,045] [main] java.version = 11.0.16 [testng] 08:54:47,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:54:47,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:54:47,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-14_08-54-47.log] [testng] 08:54:47,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-14 08:54:47,091] [main] testng.directory = /data [testng] [2024-12-14 08:54:47,091] [main] testng.configDirectory = /config [testng] [2024-12-14 08:54:47,100] [main] testng.multiplier = 1.0 [testng] [2024-12-14 08:54:47,101] [main] testng.in-memory = false [testng] [2024-12-14 08:54:47,101] [main] testng.allow-missing = false [testng] [2024-12-14 08:54:47,101] [main] user.language = en [testng] [2024-12-14 08:54:47,101] [main] user.country = ${user.country} [testng] [2024-12-14 08:54:47,101] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-14 08:54:55,049] [main] ---------------------------------------- [testng] [2024-12-14 08:54:55,049] [main] Total files: 22 [testng] [2024-12-14 08:54:55,049] [main] Scan time: 7.948 s (361 ms/file) [testng] [2024-12-14 08:54:55,049] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-14 08:55:30,371] [pool-1-thread-1] Initializing /data/converted/clown8c.tif: [testng] 08:55:30,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:55:30,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:30,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-14_08-55-30.log] [testng] 08:55:30,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1926aa8 - End of configuration. [testng] [2024-12-14 08:55:32,836] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips: [testng] 08:55:32,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:55:32,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:32,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-14_08-55-32.log] [testng] 08:55:32,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cd14542 - End of configuration. [testng] [2024-12-14 08:55:33,898] [pool-1-thread-11] Initializing /data/converted/clown8c.ipw: [testng] 08:55:33,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:55:33,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:33,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-14_08-55-33.log] [testng] 08:55:33,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c92a37 - End of configuration. [testng] [2024-12-14 08:55:34,944] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 08:55:34,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:55:34,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:34,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-14_08-55-34.log] [testng] 08:55:34,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bb23c7b - End of configuration. [testng] [2024-12-14 08:55:36,044] [pool-1-thread-9] Initializing /data/converted/mitosis-test.tif: [testng] 08:55:36,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:55:36,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:36,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-14_08-55-36.log] [testng] 08:55:36,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3186c21 - End of configuration. [testng] [2024-12-14 08:55:38,617] [pool-1-thread-8] Initializing /data/converted/dub01.pic: [testng] 08:55:38,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:55:38,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:38,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-14_08-55-38.log] [testng] 08:55:38,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56dc9734 - End of configuration. [testng] [2024-12-14 08:55:39,617] [pool-1-thread-7] Initializing /data/converted/dub01.ipw: [testng] 08:55:39,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:55:39,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:39,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-14_08-55-39.log] [testng] 08:55:39,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a088d82 - End of configuration. [testng] [2024-12-14 08:55:40,600] [pool-1-thread-6] Initializing /data/converted/clown.ipw: [testng] 08:55:40,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:55:40,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:40,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-14_08-55-40.log] [testng] 08:55:40,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ec9bcf4 - End of configuration. [testng] [2024-12-14 08:55:41,606] [pool-1-thread-5] Initializing /data/samples/PROBE.TIF: [testng] 08:55:41,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:55:41,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:41,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-14_08-55-41.log] [testng] 08:55:41,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@459a1ca - End of configuration. [testng] [2024-12-14 08:55:42,645] [pool-1-thread-4] Initializing /data/converted/mitosis-test.seq: [testng] 08:55:42,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:55:42,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:42,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-14_08-55-42.log] [testng] 08:55:42,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678cffd9 - End of configuration. [testng] [2024-12-14 08:55:43,723] [pool-1-thread-3] Initializing /data/samples/TISSUE.TIF: [testng] 08:55:43,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:55:43,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:43,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-14_08-55-43.log] [testng] 08:55:43,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56db8742 - End of configuration. [testng] [2024-12-14 08:55:46,252] [pool-1-thread-2] Initializing /data/samples/HEART.SEQ: [testng] 08:55:46,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:55:46,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:46,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-14_08-55-46.log] [testng] 08:55:46,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69a167a3 - End of configuration. [testng] [2024-12-14 08:55:56,630] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-12-14 08:55:59,331] [pool-1-thread-10] Initializing /data/converted/mitosis-test.ipw: [testng] [2024-12-14 08:56:00,424] [pool-1-thread-6] Initializing /data/converted/clown.tif: [testng] [2024-12-14 08:56:01,533] [pool-1-thread-8] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-12-14 08:56:04,133] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] [2024-12-14 08:56:05,194] [pool-1-thread-4] Initializing /data/converted/dub01.seq: [testng] [2024-12-14 08:56:06,306] [pool-1-thread-2] Initializing /data/converted/clown8c.seq: [testng] [2024-12-14 08:56:07,447] [pool-1-thread-5] Initializing /data/xiuwen/head2.seq: [testng] [2024-12-14 08:56:16,685] [pool-1-thread-1] Initializing /data/converted/clown.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 55 seconds Finished: SUCCESS