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Started by upstream project "BIOFORMATS-test-repo" build number 291 originally caused by: Started by upstream project "Trigger" build number 310 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins3645719854534619874.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45925_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:30,378 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:30,379 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:22:30,379 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:30,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:30,380 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:30,381 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:30,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:30,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:30,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:30,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:30,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:30,383 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:30,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:30,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:30,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:30,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:30,574 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:30,574 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:30,574 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:30,575 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:30,575 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:22:30,575 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:22:30,576 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-15 00:22:30,584] [main] java.version = 17.0.2 [testng] 00:22:30,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:30,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-15_00-22-30.log] [testng] 00:22:30,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-15 00:22:30,631] [main] testng.directory = /data [testng] [2024-12-15 00:22:30,632] [main] testng.configDirectory = /config [testng] [2024-12-15 00:22:30,640] [main] testng.multiplier = 1.0 [testng] [2024-12-15 00:22:30,641] [main] testng.in-memory = false [testng] [2024-12-15 00:22:30,641] [main] testng.allow-missing = false [testng] [2024-12-15 00:22:30,641] [main] user.language = en [testng] [2024-12-15 00:22:30,641] [main] user.country = ${user.country} [testng] [2024-12-15 00:22:30,641] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-15 00:23:14,272] [main] ---------------------------------------- [testng] [2024-12-15 00:23:14,272] [main] Total files: 4426 [testng] [2024-12-15 00:23:14,272] [main] Scan time: 43.631 s (9 ms/file) [testng] [2024-12-15 00:23:14,272] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-15 00:57:27,545] [pool-1-thread-1] Initializing /data/wayne/apple.tif: [testng] 00:57:27,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:57:27,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:27,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-15_00-57-27.log] [testng] 00:57:27,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ab48b78 - End of configuration. [testng] [2024-12-15 00:57:30,068] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z060.tif: [testng] 00:57:30,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:57:30,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:30,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-15_00-57-30.log] [testng] 00:57:30,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e02b47c - End of configuration. [testng] [2024-12-15 00:57:33,650] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] 00:57:33,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:57:33,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:33,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-15_00-57-33.log] [testng] 00:57:33,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e2d0e15 - End of configuration. [testng] [2024-12-15 00:57:36,084] [pool-1-thread-10] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] 00:57:36,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:57:36,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:36,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-15_00-57-36.log] [testng] 00:57:36,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f5b3ddb - End of configuration. [testng] [2024-12-15 00:57:39,433] [pool-1-thread-9] Initializing /data/curtis/test1.tiff: [testng] 00:57:39,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:57:39,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:39,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-15_00-57-39.log] [testng] 00:57:39,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65e0a433 - End of configuration. [testng] [2024-12-15 00:57:43,267] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z005.tif: [testng] 00:57:43,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:57:43,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:43,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-15_00-57-43.log] [testng] 00:57:43,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10263305 - End of configuration. [testng] [2024-12-15 00:57:45,871] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x32.tiff: [testng] 00:57:45,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:57:45,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:45,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-15_00-57-45.log] [testng] 00:57:45,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e77f563 - End of configuration. [testng] [2024-12-15 00:57:48,451] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] 00:57:48,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:57:48,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:48,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-15_00-57-48.log] [testng] 00:57:48,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7abba6c3 - End of configuration. [testng] [2024-12-15 00:57:51,543] [pool-1-thread-5] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] 00:57:51,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:57:51,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:51,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-15_00-57-51.log] [testng] 00:57:51,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21589d32 - End of configuration. [testng] [2024-12-15 00:57:54,945] [pool-1-thread-4] Initializing /data/josiah/cell-Z34.C0.tiff: [testng] 00:57:54,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:57:54,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:54,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-15_00-57-54.log] [testng] 00:57:54,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f7f8593 - End of configuration. [testng] [2024-12-15 00:57:57,009] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] 00:57:57,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:57:57,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:57,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-15_00-57-57.log] [testng] 00:57:57,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@330dacbe - End of configuration. [testng] [2024-12-15 00:58:00,858] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] 00:58:00,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:58:00,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:00,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-15_00-58-00.log] [testng] 00:58:00,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cebf5a8 - End of configuration. [testng] [2024-12-15 00:58:24,517] [pool-1-thread-9] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-12-15 00:58:26,078] [pool-1-thread-7] Initializing /data/wayne/mBoeglin_lzw/mm7.1.2.0_07.tif: [testng] [2024-12-15 00:58:27,375] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-12-15 00:58:29,758] [pool-1-thread-6] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-12-15 00:58:32,143] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] [2024-12-15 00:58:35,410] [pool-1-thread-1] Initializing /data/michael/WonkyTrafficLight.tiff: [testng] [2024-12-15 00:58:37,421] [pool-1-thread-11] Initializing /data/pavel/Dmel/full.pattern: [testng] [2024-12-15 00:58:57,892] [pool-1-thread-12] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs006.TIF: [testng] [2024-12-15 00:58:59,506] [pool-1-thread-10] Initializing /data/josiah/cell-Z28.C0.tiff: [testng] [2024-12-15 00:59:01,451] [pool-1-thread-4] Initializing /data/curtis/imagesEight.tiff: [testng] [2024-12-15 00:59:03,318] [pool-1-thread-8] Initializing /data/martin/head.tif: [testng] [2024-12-15 00:59:04,813] [pool-1-thread-5] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-12-15 00:59:15,830] [pool-1-thread-7] Initializing /data/samples/melissa/imagej-last-ifd/Rat_Hippocampal_Neuron.tif: [testng] [2024-12-15 00:59:20,545] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z015.tif: [testng] [2024-12-15 00:59:21,751] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0250.TIF: [testng] [2024-12-15 00:59:23,093] [pool-1-thread-1] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-12-15 00:59:25,683] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z022.tif: [testng] [2024-12-15 00:59:28,017] [pool-1-thread-6] Initializing /data/kevino/_BF_00004.tif: [testng] [2024-12-15 00:59:29,470] [pool-1-thread-5] Initializing /data/wayne/Rockies-48bit-rgb.tif: [testng] [2024-12-15 00:59:30,778] [pool-1-thread-2] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-12-15 00:59:32,086] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x16.tiff: [testng] [2024-12-15 00:59:34,432] [pool-1-thread-9] Initializing /data/public/cellprofiler/fruit-fly-cells/POS218.pattern/POS218.pattern: [testng] [2024-12-15 00:59:41,789] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-12-15 00:59:51,744] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z017.tif: [testng] [2024-12-15 00:59:54,122] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0203.TIF: [testng] [2024-12-15 00:59:55,753] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z029.tif: [testng] [2024-12-15 00:59:56,630] [pool-1-thread-4] Initializing /data/qa-4745/LIBPB476_Figure 1_H_NA_21879.tiff: [testng] [2024-12-15 00:59:57,798] [pool-1-thread-6] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-12-15 00:59:58,240] [pool-1-thread-10] Initializing /data/josh/NESb_C2_TP8.tiff: [testng] [2024-12-15 00:59:59,160] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z043.tif: [testng] [2024-12-15 01:00:00,081] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z031.tif: [testng] [2024-12-15 01:00:00,922] [pool-1-thread-2] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-12-15 01:00:01,755] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-02.tiff: [testng] [2024-12-15 01:00:10,504] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo.tif: [testng] [2024-12-15 01:00:12,283] [pool-1-thread-12] Initializing /data/public/condensation/A1.pattern2.tif: [testng] [2024-12-15 01:00:14,167] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-12-15 01:00:16,068] [pool-1-thread-1] Initializing /data/josiah/cell-Z5.C1.tiff: [testng] [2024-12-15 01:00:17,843] [pool-1-thread-8] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2024-12-15 01:00:19,310] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z001.tif: [testng] [2024-12-15 01:00:20,535] [pool-1-thread-5] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-12-15 01:00:21,641] [pool-1-thread-2] Initializing /data/josh/NESb_C2_TP10.tiff: [testng] [2024-12-15 01:00:22,750] [pool-1-thread-4] Initializing /data/boguslaw/Arabidopsis_large.tif: [testng] [2024-12-15 01:00:23,784] [pool-1-thread-10] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-12-15 01:00:24,799] [pool-1-thread-11] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] [2024-12-15 01:00:33,423] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x64.tiff: [testng] [2024-12-15 01:00:34,698] [pool-1-thread-6] Initializing 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[testng] [2024-12-15 01:54:31,847] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-12-15 01:54:35,677] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs012.TIF: [testng] [2024-12-15 01:54:39,432] [pool-1-thread-4] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2024-12-15 01:54:42,737] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x64.tiff: [testng] [2024-12-15 01:54:46,099] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z026.tif: [testng] [2024-12-15 01:54:49,578] [pool-1-thread-8] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-12-15 01:54:52,951] [pool-1-thread-2] Initializing /data/josiah/cell-Z25.C0.tiff: [testng] [2024-12-15 01:54:56,451] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z055.tif: [testng] [2024-12-15 01:55:00,692] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z018.tif: 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02:02:28,582] [pool-1-thread-5] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-12-15 02:02:32,222] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z033.tif: [testng] [2024-12-15 02:02:35,826] [pool-1-thread-1] Initializing /data/curtis/map/the-quick: [testng] [2024-12-15 02:02:39,176] [pool-1-thread-4] Initializing /data/ascb/FND-22_FawcettLongitudinalMammalian_4800.tif: [testng] [2024-12-15 02:02:42,637] [pool-1-thread-10] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-12-15 02:02:48,576] [pool-1-thread-3] Initializing /data/ascb/FND-26_PaladeGlycogen_4800.tif: [testng] [2024-12-15 02:02:52,245] [pool-1-thread-2] Initializing /data/josiah/cell-Z30.C0.tiff: [testng] [2024-12-15 02:02:56,090] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z006.tif: [testng] [2024-12-15 02:03:01,287] [pool-1-thread-12] Initializing /data/ascb/CYT-50_FriendSecretoryPairA_4800.tif: [testng] [2024-12-15 02:03:04,141] [pool-1-thread-11] Initializing 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/data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-12-15 02:04:01,423] [pool-1-thread-3] Initializing /data/zstd-compressed/beads.tif: [testng] [2024-12-15 02:04:13,786] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z055.tif: [testng] [2024-12-15 02:04:19,862] [pool-1-thread-12] Initializing /data/boguslaw/Arabidopsis.tiff: [testng] [2024-12-15 02:04:32,682] [pool-1-thread-10] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-12-15 02:04:35,839] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-12-15 02:04:38,943] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z044.tif: [testng] [2024-12-15 02:04:42,588] [pool-1-thread-7] Initializing /data/josiah/cell-Z4.C1.tiff: [testng] [2024-12-15 02:04:46,382] [pool-1-thread-1] Initializing /data/josiah/cell-Z15.C0.tiff: [testng] [2024-12-15 02:04:49,842] [pool-1-thread-8] Initializing /data/sub-resolution/Leica-3/Leica-3-subifds.tiff: [testng] [2024-12-15 02:04:52,862] [pool-1-thread-9] Initializing /data/wayne/screen-rgb.tiff: [testng] [2024-12-15 02:04:56,860] [pool-1-thread-4] Initializing /data/marc/ball48_LOCI_2_RGB_autoscale_10x.tif: [testng] [2024-12-15 02:04:59,816] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z017.tif: [testng] [2024-12-15 02:05:03,567] [pool-1-thread-6] Initializing /data/josiah/cell-Z26.C0.tiff: [testng] [2024-12-15 02:05:11,857] [pool-1-thread-11] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-12-15 02:05:21,501] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-12-15 02:05:28,020] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z000.tif: [testng] [2024-12-15 02:05:31,429] [pool-1-thread-1] Initializing /data/samples/melissa/imagej-4gb/4gb-test&sizeX=1024&sizeY=1024&pixelType=uint16&sizeC=2050.fake: [testng] [2024-12-15 02:05:32,475] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z008.tif: [testng] [2024-12-15 02:05:35,534] [pool-1-thread-7] Initializing /data/ascb/CYT-29_BaintonGlycogenAB_4800.tif: [testng] [2024-12-15 02:05:39,863] [pool-1-thread-10] Initializing /data/josh/NESb_C2_TP2.tiff: [testng] [2024-12-15 02:05:44,997] [pool-1-thread-5] Initializing /data/josh/NESb_C2_TP4.tiff: [testng] [2024-12-15 02:05:48,789] [pool-1-thread-6] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-12-15 02:05:56,066] [pool-1-thread-4] Initializing /data/kevino/_BF_00001.tif: [testng] [2024-12-15 02:05:59,120] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-12-15 02:06:11,652] [pool-1-thread-11] Initializing /data/josiah/cell-Z2.C0.tiff: [testng] [2024-12-15 02:06:15,366] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z040.tif: [testng] [2024-12-15 02:06:18,825] [pool-1-thread-12] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-12-15 02:06:22,347] [pool-1-thread-2] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] [2024-12-15 02:06:26,180] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-12-15 02:06:29,401] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z036.tif: [testng] [2024-12-15 02:06:31,958] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-12-15 02:06:34,815] [pool-1-thread-3] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] 02:07:00,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:07:00,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:00,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-15_02-07-00.log] [testng] 02:07:00,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d1035ec - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 104 minutes 33 seconds Finished: SUCCESS