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Started by upstream project "BIOFORMATS-test-repo" build number 291 originally caused by: Started by upstream project "Trigger" build number 310 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins2473683599584004431.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45929_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:24:46,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:24:46,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:24:46,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:46,637 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:46,638 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:24:46,638 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:24:46,638 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:24:46,638 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:46,639 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:46,639 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:24:46,640 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:24:46,640 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:24:46,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:24:46,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:24:46,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:24:46,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:24:46,847 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:24:46,847 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:24:46,847 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:24:46,848 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:24:46,848 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:24:46,849 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:24:46,849 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-15 00:24:46,857] [main] java.version = 17.0.2 [testng] 00:24:46,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:24:46,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:46,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-15_00-24-46.log] [testng] 00:24:46,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-15 00:24:46,906] [main] testng.directory = /data [testng] [2024-12-15 00:24:46,906] [main] testng.configDirectory = /config [testng] [2024-12-15 00:24:46,915] [main] testng.multiplier = 1.0 [testng] [2024-12-15 00:24:46,915] [main] testng.in-memory = false [testng] [2024-12-15 00:24:46,915] [main] testng.allow-missing = false [testng] [2024-12-15 00:24:46,916] [main] user.language = en [testng] [2024-12-15 00:24:46,916] [main] user.country = ${user.country} [testng] [2024-12-15 00:24:46,916] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-15 00:25:41,295] [main] ---------------------------------------- [testng] [2024-12-15 00:25:41,295] [main] Total files: 21 [testng] [2024-12-15 00:25:41,295] [main] Scan time: 54.379 s (2589 ms/file) [testng] [2024-12-15 00:25:41,295] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-15 00:26:54,823] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt: [testng] 00:26:54,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:26:54,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:54,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-15_00-26-54.log] [testng] 00:26:54,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39b6e397 - End of configuration. [testng] [2024-12-15 00:26:57,148] [pool-1-thread-12] Initializing /data/stefan/001_q18.txt: [testng] 00:26:57,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:26:57,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:57,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-15_00-26-57.log] [testng] 00:26:57,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a2e34e4 - End of configuration. [testng] [2024-12-15 00:27:00,733] [pool-1-thread-11] Initializing /data/stefan/001_q10.txt: [testng] 00:27:00,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:27:00,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:00,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-15_00-27-00.log] [testng] 00:27:00,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11f82f52 - End of configuration. [testng] [2024-12-15 00:27:06,720] [pool-1-thread-10] Initializing /data/stefan/001_q01.txt: [testng] 00:27:06,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:27:06,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:06,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-15_00-27-06.log] [testng] 00:27:06,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2732151b - End of configuration. [testng] [2024-12-15 00:27:10,494] [pool-1-thread-9] Initializing /data/stefan/001_q15.txt: [testng] 00:27:10,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:27:10,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:10,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-15_00-27-10.log] [testng] 00:27:10,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f2bed2 - End of configuration. [testng] [2024-12-15 00:27:14,150] [pool-1-thread-8] Initializing /data/stefan/001_q13.txt: [testng] 00:27:14,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:27:14,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:14,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-15_00-27-14.log] [testng] 00:27:14,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@342cd78c - End of configuration. [testng] [2024-12-15 00:27:17,246] [pool-1-thread-7] Initializing /data/stefan/001_q09.txt: [testng] 00:27:17,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:27:17,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:17,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-15_00-27-17.log] [testng] 00:27:17,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c8651c1 - End of configuration. [testng] [2024-12-15 00:27:21,647] [pool-1-thread-6] Initializing /data/stefan/001_q06.txt: [testng] 00:27:21,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:27:21,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:21,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-15_00-27-21.log] [testng] 00:27:21,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68707ea2 - End of configuration. [testng] [2024-12-15 00:27:23,730] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt: [testng] 00:27:23,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:27:23,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:23,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-15_00-27-23.log] [testng] 00:27:23,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72639505 - End of configuration. [testng] [2024-12-15 00:27:28,113] [pool-1-thread-4] Initializing /data/stefan/001_q17.txt: [testng] 00:27:28,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:27:28,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:28,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-15_00-27-28.log] [testng] 00:27:28,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c7461fc - End of configuration. [testng] [2024-12-15 00:27:30,477] [pool-1-thread-3] Initializing /data/stefan/001_q14.txt: [testng] 00:27:30,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:27:30,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:30,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-15_00-27-30.log] [testng] 00:27:30,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b7c99e5 - End of configuration. [testng] [2024-12-15 00:27:32,906] [pool-1-thread-2] Initializing /data/stefan/001_q11.txt: [testng] 00:27:32,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:27:32,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:32,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-15_00-27-32.log] [testng] 00:27:32,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1455eee2 - End of configuration. [testng] [2024-12-15 00:28:19,634] [pool-1-thread-10] Initializing /data/stefan/001_q05.txt: [testng] [2024-12-15 00:28:23,229] [pool-1-thread-1] Initializing /data/stefan/001_q16.txt: [testng] [2024-12-15 00:28:25,487] [pool-1-thread-12] Initializing /data/stefan/001_q03.txt: [testng] [2024-12-15 00:28:28,137] [pool-1-thread-8] Initializing /data/stefan/001_q08.txt: [testng] [2024-12-15 00:28:32,917] [pool-1-thread-9] Initializing /data/stefan/001_q07.txt: [testng] [2024-12-15 00:28:38,022] [pool-1-thread-4] Initializing /data/stefan/001_q02.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 56 seconds Finished: SUCCESS