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Started by upstream project "BIOFORMATS-test-repo" build number 291 originally caused by: Started by upstream project "Trigger" build number 310 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1159010885221309064.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45955_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:59:51,713 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:59:51,714 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:59:51,714 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:59:51,715 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:59:51,715 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:59:51,716 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:59:51,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:59:51,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:59:51,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:59:51,717 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:59:51,717 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:59:51,717 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:59:51,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:59:51,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:59:51,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:59:51,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:59:51,904 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:59:51,904 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:59:51,904 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:59:51,905 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:59:51,905 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:59:51,905 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:59:51,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-15 00:59:51,914] [main] java.version = 17.0.2 [testng] 00:59:51,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:59:51,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:51,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-15_00-59-51.log] [testng] 00:59:51,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-15 00:59:51,961] [main] testng.directory = /data [testng] [2024-12-15 00:59:51,961] [main] testng.configDirectory = /config [testng] [2024-12-15 00:59:51,969] [main] testng.multiplier = 1.0 [testng] [2024-12-15 00:59:51,970] [main] testng.in-memory = false [testng] [2024-12-15 00:59:51,970] [main] testng.allow-missing = false [testng] [2024-12-15 00:59:51,971] [main] user.language = en [testng] [2024-12-15 00:59:51,971] [main] user.country = ${user.country} [testng] [2024-12-15 00:59:51,971] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-15 01:00:38,611] [main] ---------------------------------------- [testng] [2024-12-15 01:00:38,611] [main] Total files: 259 [testng] [2024-12-15 01:00:38,611] [main] Scan time: 46.64 s (180 ms/file) [testng] [2024-12-15 01:00:38,611] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-15 01:37:19,585] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 01:37:19,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:37:19,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:19,587 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-15_01-37-19.log] [testng] 01:37:19,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20455cf0 - End of configuration. [testng] [2024-12-15 01:38:20,780] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] 01:38:20,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:38:20,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:20,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-15_01-38-20.log] [testng] 01:38:20,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21d85f67 - End of configuration. [testng] [2024-12-15 01:38:22,365] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] 01:38:22,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:38:22,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:22,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-15_01-38-22.log] [testng] 01:38:22,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41ac9d44 - End of configuration. [testng] [2024-12-15 01:38:23,701] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] 01:38:23,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:38:23,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:23,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-15_01-38-23.log] [testng] 01:38:23,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a97571 - End of configuration. [testng] [2024-12-15 01:38:27,644] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] 01:38:27,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:38:27,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:27,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-15_01-38-27.log] [testng] 01:38:27,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62389fb6 - End of configuration. [testng] [2024-12-15 01:38:29,467] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] 01:38:29,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:38:29,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:29,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-15_01-38-29.log] [testng] 01:38:29,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c31bd20 - End of configuration. [testng] [2024-12-15 01:38:32,686] [pool-1-thread-7] Initializing /data/brian/PA-GFP-3.oib: [testng] 01:38:32,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:38:32,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:32,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-15_01-38-32.log] [testng] 01:38:32,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68ce7cc1 - End of configuration. [testng] [2024-12-15 01:38:34,547] [pool-1-thread-6] Initializing /data/stefan/cytosol_03e.oib: [testng] 01:38:34,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:38:34,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:34,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-15_01-38-34.log] [testng] 01:38:34,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@145c1f58 - End of configuration. [testng] [2024-12-15 01:38:36,424] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 01:38:36,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:38:36,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:36,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-15_01-38-36.log] [testng] 01:38:36,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@604c69e - End of configuration. [testng] [2024-12-15 01:38:40,012] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] 01:38:40,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:38:40,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:40,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-15_01-38-40.log] [testng] 01:38:40,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@168b0460 - End of configuration. [testng] [2024-12-15 01:38:41,456] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] 01:38:41,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:38:41,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:41,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-15_01-38-41.log] [testng] 01:38:41,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79d2a43a - End of configuration. [testng] [2024-12-15 01:38:59,164] [pool-1-thread-2] Initializing /data/glen/Null file/test no change.oif: [testng] 01:38:59,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:38:59,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:59,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-15_01-38-59.log] [testng] 01:38:59,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44191698 - End of configuration. [testng] [2024-12-15 01:39:15,748] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-12-15 01:39:18,057] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-12-15 01:39:19,842] [pool-1-thread-7] Initializing /data/marc/V0606L.oib: [testng] [2024-12-15 01:39:23,445] [pool-1-thread-4] Initializing /data/molly/11OCT7.OIF: [testng] [2024-12-15 01:39:57,306] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-12-15 01:39:59,551] [pool-1-thread-12] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-12-15 01:40:15,882] [pool-1-thread-11] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-12-15 01:40:17,571] [pool-1-thread-9] Initializing /data/glen/simulstack.oib: [testng] [2024-12-15 01:40:19,588] [pool-1-thread-6] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-12-15 01:40:31,329] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-12-15 01:40:33,156] [pool-1-thread-7] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-12-15 01:40:37,085] [pool-1-thread-11] Initializing /data/marc/V0606J.oib: [testng] [2024-12-15 01:40:42,917] [pool-1-thread-9] Initializing /data/glen/simulstack.oif: [testng] [2024-12-15 01:40:53,649] [pool-1-thread-12] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-12-15 01:40:56,752] [pool-1-thread-2] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-12-15 01:40:58,474] [pool-1-thread-7] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-12-15 01:41:20,243] [pool-1-thread-11] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-12-15 01:41:25,688] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-12-15 01:41:40,312] [pool-1-thread-2] Initializing /data/glen/singlesimul.oib: [testng] [2024-12-15 01:41:51,600] [pool-1-thread-2] Initializing /data/glen/seqlinestack.oib: [testng] [2024-12-15 01:42:02,723] [pool-1-thread-11] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-12-15 01:42:06,863] [pool-1-thread-2] Initializing /data/allan/62909#1.oib: [testng] [2024-12-15 01:42:18,157] [pool-1-thread-11] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-12-15 01:42:22,656] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-12-15 01:42:36,114] [pool-1-thread-11] Initializing /data/tom/zseries-test.oib: [testng] [2024-12-15 01:42:41,145] [pool-1-thread-2] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-12-15 01:42:43,413] [pool-1-thread-8] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-12-15 01:43:11,978] [pool-1-thread-2] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-12-15 01:43:13,986] [pool-1-thread-11] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-12-15 01:43:17,154] [pool-1-thread-12] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-12-15 01:43:28,317] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-12-15 01:43:30,913] [pool-1-thread-11] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-12-15 01:43:34,527] [pool-1-thread-12] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-12-15 01:43:45,790] [pool-1-thread-2] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-12-15 01:43:47,510] [pool-1-thread-11] Initializing /data/molly/11OCT10.OIF: [testng] [2024-12-15 01:44:46,709] [pool-1-thread-12] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-12-15 01:44:53,781] [pool-1-thread-2] Initializing /data/molly/11OCT6.OIF: [testng] [2024-12-15 01:45:45,256] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oif: [testng] [2024-12-15 01:46:25,193] [pool-1-thread-5] Initializing /data/molly/11OCT4.OIF: [testng] [2024-12-15 01:48:07,324] [pool-1-thread-12] Initializing /data/molly/11OCT8.OIF: [testng] [2024-12-15 01:48:57,262] [pool-1-thread-10] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-12-15 01:49:08,259] [pool-1-thread-10] Initializing /data/david/Image0016.oib: [testng] [2024-12-15 01:49:17,458] [pool-1-thread-10] Initializing /data/glen/singleseqline.oif: [testng] [2024-12-15 01:51:00,679] [pool-1-thread-10] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-12-15 01:51:09,675] [pool-1-thread-10] Initializing /data/aryeh/control_test.oib: [testng] [2024-12-15 01:51:41,663] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-12-15 01:51:53,896] [pool-1-thread-10] Initializing /data/jae/Image0001.oib: [testng] [2024-12-15 01:52:06,413] [pool-1-thread-10] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-12-15 01:52:19,231] [pool-1-thread-10] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-12-15 01:53:39,216] [pool-1-thread-10] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-12-15 01:53:50,502] [pool-1-thread-10] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-12-15 01:53:53,314] [pool-1-thread-10] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-12-15 01:54:03,567] [pool-1-thread-10] Initializing /data/johannes/step5b.bmp: [testng] [2024-12-15 01:54:08,175] [pool-1-thread-10] Initializing /data/molly/11OCT9.OIF: [testng] [2024-12-15 02:02:05,917] [pool-1-thread-6] Initializing /data/johannes/step4.bmp: [testng] [2024-12-15 02:02:12,006] [pool-1-thread-6] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-12-15 02:02:23,939] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-12-15 02:02:36,378] [pool-1-thread-6] Initializing /data/tom/RGB-1.avi: [testng] [2024-12-15 02:02:42,468] [pool-1-thread-6] Initializing /data/yoshihito/XY.oif: [testng] [2024-12-15 02:03:32,775] [pool-1-thread-6] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-12-15 02:03:40,357] [pool-1-thread-6] Initializing /data/glen/4205basal106072.oif: [testng] [2024-12-15 02:12:57,292] [pool-1-thread-9] Initializing /data/sten/01.oib: [testng] [2024-12-15 02:13:05,310] [pool-1-thread-9] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-12-15 02:13:11,764] [pool-1-thread-9] Initializing /data/molly/11OCT3.OIF: [testng] [2024-12-15 02:14:51,915] [pool-1-thread-7] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-12-15 02:15:16,435] [pool-1-thread-7] Initializing /data/glen/singlesimul.oif: [testng] [2024-12-15 02:17:10,610] [pool-1-thread-7] Initializing /data/simon/used_to_work.oib: [testng] [2024-12-15 02:17:20,950] [pool-1-thread-7] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-12-15 02:17:29,424] [pool-1-thread-7] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-12-15 02:17:41,400] [pool-1-thread-7] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-12-15 02:17:52,808] [pool-1-thread-7] Initializing /data/aryeh/1h.oib: [testng] [2024-12-15 02:18:10,178] [pool-1-thread-7] Initializing /data/glen/111407.oif: [testng] [2024-12-15 02:21:22,503] [pool-1-thread-4] Initializing /data/chris/missegragation-15.oib: [testng] [2024-12-15 02:21:34,973] [pool-1-thread-4] Initializing /data/glen/singleseqframe.oib: [testng] [2024-12-15 02:21:48,281] [pool-1-thread-4] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-12-15 02:30:13,135] [pool-1-thread-5] Initializing /data/monica/Image0056.oif: [testng] [2024-12-15 02:32:40,180] [pool-1-thread-5] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-12-15 02:32:54,942] [pool-1-thread-5] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-12-15 02:33:08,968] [pool-1-thread-5] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-12-15 02:33:22,261] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-12-15 02:33:36,147] [pool-1-thread-5] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-12-15 02:38:31,634] [pool-1-thread-12] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-12-15 02:38:39,583] [pool-1-thread-2] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-12-15 02:39:06,240] [pool-1-thread-3] Initializing /data/christian/20min.oif: [testng] [2024-12-15 02:39:13,978] [pool-1-thread-2] Initializing /data/glen/Null file/test change.oif: [testng] [2024-12-15 02:39:52,698] [pool-1-thread-3] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-12-15 02:40:07,771] [pool-1-thread-3] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-12-15 02:40:38,500] [pool-1-thread-2] Initializing /data/glen/notsaturated.oib: [testng] [2024-12-15 02:40:46,964] [pool-1-thread-8] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-12-15 02:40:56,417] [pool-1-thread-2] Initializing /data/brian/Kaede15.oib: [testng] [2024-12-15 02:41:08,757] [pool-1-thread-2] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-12-15 02:42:09,445] [pool-1-thread-8] Initializing /data/glen/Image0002.oif: [testng] [2024-12-15 02:43:44,574] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-12-15 02:43:48,032] [pool-1-thread-5] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-12-15 02:43:58,418] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-12-15 02:44:10,154] [pool-1-thread-5] Initializing /data/brian/lambda02nm.oib: [testng] [2024-12-15 02:44:22,112] [pool-1-thread-5] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-12-15 02:44:32,408] [pool-1-thread-5] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-12-15 02:44:42,491] [pool-1-thread-5] Initializing /data/michael/CELL3.oib: [testng] [2024-12-15 02:44:51,352] [pool-1-thread-5] Initializing /data/brian/FLIP.oib: [testng] [2024-12-15 02:45:04,894] [pool-1-thread-5] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-12-15 02:45:14,703] [pool-1-thread-5] Initializing /data/johannes/step1.bmp: [testng] [2024-12-15 02:45:18,793] [pool-1-thread-5] Initializing /data/molly/11OCT5.OIF: [testng] [2024-12-15 02:46:02,328] [pool-1-thread-3] Initializing /data/glen/singleseqline.oib: [testng] [2024-12-15 02:46:11,165] [pool-1-thread-3] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-12-15 02:47:06,056] [pool-1-thread-2] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-12-15 02:47:18,993] [pool-1-thread-2] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-12-15 02:47:27,728] [pool-1-thread-2] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-12-15 02:47:41,997] [pool-1-thread-2] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-12-15 02:48:40,604] [pool-1-thread-4] Initializing /data/johannes/step4b.bmp: [testng] [2024-12-15 02:48:44,200] [pool-1-thread-4] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-12-15 02:49:39,569] [pool-1-thread-11] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-12-15 02:49:55,172] [pool-1-thread-11] Initializing /data/molly/11OCT11.OIF: [testng] [2024-12-15 02:51:34,164] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-12-15 02:51:44,335] [pool-1-thread-4] Initializing /data/karl/Image0009.oib: [testng] [2024-12-15 02:51:52,882] [pool-1-thread-4] Initializing /data/molly/11OCT2.OIF: [testng] [2024-12-15 02:54:37,257] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-12-15 02:54:45,791] [pool-1-thread-7] Initializing /data/johannes/step3.bmp: [testng] [2024-12-15 02:54:49,083] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-12-15 02:54:58,434] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-12-15 02:55:08,161] [pool-1-thread-7] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-12-15 02:55:16,255] [pool-1-thread-7] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-12-15 02:58:39,109] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-12-15 02:58:53,198] [pool-1-thread-6] Initializing /data/glen/notsaturated.oif: [testng] [2024-12-15 03:00:47,479] [pool-1-thread-12] Initializing /data/kay/IM2pg.oib: [testng] [2024-12-15 03:01:00,277] [pool-1-thread-12] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-12-15 03:02:11,134] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-12-15 03:02:28,566] [pool-1-thread-12] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] 03:09:42,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:09:42,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:42,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-15_03-09-42.log] [testng] 03:09:42,734 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33fc7420 - End of configuration. [testng] [2024-12-15 03:16:52,095] [pool-1-thread-6] Initializing /data/pedro/plv-test.oib: [testng] [2024-12-15 03:17:02,992] [pool-1-thread-6] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-12-15 03:17:18,166] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-12-15 03:17:30,866] [pool-1-thread-6] Initializing /data/johannes/step2.bmp: [testng] 03:56:56,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:56:56,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:56:56,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-15_03-56-56.log] [testng] 03:56:56,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cc0a237 - End of configuration. [testng] 03:59:02,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:59:02,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:02,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-15_03-59-02.log] [testng] 03:59:02,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@248dc326 - End of configuration. [testng] 05:14:55,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:14:55,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:14:55,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-15_05-14-55.log] [testng] 05:14:55,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eb77a3 - End of configuration. [testng] 06:39:46,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:39:46,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:39:46,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-15_06-39-46.log] [testng] 06:39:46,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b0028c2 - End of configuration. [testng] 06:58:05,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:58:05,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:05,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-15_06-58-05.log] [testng] 06:58:05,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f467bb9 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 358 minutes 16 seconds Finished: SUCCESS