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Started by upstream project "BIOFORMATS-test-repo" build number 291 originally caused by: Started by upstream project "Trigger" build number 310 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins4658337582786291567.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46042_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 07:32:16,758 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:32:16,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 07:32:16,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:32:16,760 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:32:16,761 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:32:16,761 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:32:16,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:32:16,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:32:16,762 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:32:16,762 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:32:16,763 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:32:16,763 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:32:16,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:32:16,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:32:16,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:32:16,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:32:16,946 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:32:16,946 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:32:16,946 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:32:16,947 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:32:16,947 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 07:32:16,947 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 07:32:16,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-15 07:32:16,956] [main] java.version = 17.0.2 [testng] 07:32:16,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:32:16,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:32:16,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-15_07-32-16.log] [testng] 07:32:17,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-15 07:32:17,002] [main] testng.directory = /data [testng] [2024-12-15 07:32:17,002] [main] testng.configDirectory = /config [testng] [2024-12-15 07:32:17,010] [main] testng.multiplier = 1.0 [testng] [2024-12-15 07:32:17,011] [main] testng.in-memory = false [testng] [2024-12-15 07:32:17,011] [main] testng.allow-missing = false [testng] [2024-12-15 07:32:17,011] [main] user.language = en [testng] [2024-12-15 07:32:17,011] [main] user.country = ${user.country} [testng] [2024-12-15 07:32:17,012] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-15 07:39:35,933] [main] ---------------------------------------- [testng] [2024-12-15 07:39:35,933] [main] Total files: 15735 [testng] [2024-12-15 07:39:35,933] [main] Scan time: 438.921 s (27 ms/file) [testng] [2024-12-15 07:39:35,934] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-15 07:51:15,866] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 07:51:15,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:51:15,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:51:15,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-15_07-51-15.log] [testng] 07:51:15,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bb84065 - End of configuration. [testng] [2024-12-15 07:51:19,467] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 07:51:19,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:51:19,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:51:19,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-15_07-51-19.log] [testng] 07:51:19,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cff9634 - End of configuration. [testng] [2024-12-15 07:51:24,160] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 07:51:24,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:51:24,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:51:24,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-15_07-51-24.log] [testng] 07:51:24,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f973543 - End of configuration. [testng] [2024-12-15 07:51:30,160] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 07:51:30,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:51:30,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:51:30,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-15_07-51-30.log] [testng] 07:51:30,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f993f61 - End of configuration. [testng] [2024-12-15 07:51:37,262] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 07:51:37,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:51:37,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:51:37,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-15_07-51-37.log] [testng] 07:51:37,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7511a47e - End of configuration. [testng] [2024-12-15 07:51:42,997] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 07:51:42,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:51:42,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:51:42,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-15_07-51-42.log] [testng] 07:51:42,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@182bcf70 - End of configuration. [testng] [2024-12-15 07:51:47,478] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 07:51:47,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:51:47,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:51:47,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-15_07-51-47.log] [testng] 07:51:47,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b6fbe72 - End of configuration. [testng] [2024-12-15 07:51:51,354] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 07:51:51,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:51:51,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:51:51,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-15_07-51-51.log] [testng] 07:51:51,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c9e8d7d - End of configuration. [testng] [2024-12-15 07:51:55,196] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 07:51:55,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:51:55,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:51:55,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-15_07-51-55.log] [testng] 07:51:55,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@788e3003 - End of configuration. [testng] [2024-12-15 07:51:59,159] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 07:51:59,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:51:59,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:51:59,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-15_07-51-59.log] [testng] 07:51:59,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e59fa94 - End of configuration. [testng] [2024-12-15 07:52:04,887] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 07:52:04,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:52:04,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:04,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-15_07-52-04.log] [testng] 07:52:04,888 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26ec8396 - End of configuration. [testng] [2024-12-15 07:52:12,715] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 07:52:12,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:52:12,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:52:12,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-15_07-52-12.log] [testng] 07:52:12,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a8d3a67 - End of configuration. [testng] [2024-12-15 07:53:31,787] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-12-15 07:54:00,486] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-12-15 07:54:11,681] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-12-15 07:55:59,822] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-12-15 08:04:16,885] [pool-1-thread-4] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-12-15 08:04:31,581] [pool-1-thread-5] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-12-15 08:05:40,695] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-12-15 08:06:54,921] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-12-15 08:09:50,050] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-12-15 08:11:05,139] [pool-1-thread-5] Initializing /data/converted/michel/a.tif: [testng] [2024-12-15 08:11:38,493] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-12-15 08:12:49,764] [pool-1-thread-5] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-12-15 08:13:52,455] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-12-15 08:14:56,973] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-12-15 08:15:54,840] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-12-15 08:17:20,422] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-12-15 08:17:42,282] [pool-1-thread-12] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-12-15 08:17:48,577] [pool-1-thread-2] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-12-15 08:18:56,809] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-12-15 08:19:06,556] [pool-1-thread-6] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-12-15 08:20:29,355] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-12-15 08:21:27,704] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-12-15 08:21:51,411] [pool-1-thread-5] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-12-15 08:23:08,642] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-12-15 08:23:52,268] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-12-15 08:24:08,752] [pool-1-thread-6] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-12-15 08:24:43,569] [pool-1-thread-12] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-12-15 08:25:11,797] [pool-1-thread-8] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-12-15 08:26:29,420] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-12-15 08:27:06,609] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-12-15 08:28:31,306] [pool-1-thread-2] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-12-15 08:30:19,908] [pool-1-thread-2] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-12-15 08:31:43,544] [pool-1-thread-2] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-12-15 08:32:50,686] [pool-1-thread-2] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-12-15 08:33:19,499] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-12-15 08:44:01,397] [pool-1-thread-7] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-12-15 08:46:43,701] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-12-15 08:47:37,147] [pool-1-thread-3] Initializing /data/scott/Slide133-08.tif: [testng] [2024-12-15 08:48:42,672] [pool-1-thread-3] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-12-15 08:49:29,795] [pool-1-thread-1] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-12-15 08:50:28,590] [pool-1-thread-3] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-12-15 08:52:06,503] [pool-1-thread-9] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-12-15 08:52:11,156] [pool-1-thread-11] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-12-15 08:53:22,099] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-12-15 08:53:26,931] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] 08:54:06,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:54:06,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:54:06,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-15_08-54-06.log] [testng] 08:54:06,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41874ef2 - End of configuration. [testng] [2024-12-15 08:58:01,314] [pool-1-thread-5] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-12-15 09:01:37,976] [pool-1-thread-7] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-12-15 09:04:07,935] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-12-15 09:09:17,957] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-12-15 09:12:48,921] [pool-1-thread-11] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-12-15 09:15:09,692] [pool-1-thread-3] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-12-15 09:16:08,763] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-12-15 09:21:40,382] [pool-1-thread-10] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-12-15 09:22:44,927] [pool-1-thread-10] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-12-15 09:23:44,382] [pool-1-thread-10] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-12-15 09:25:40,091] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-12-15 09:27:16,907] [pool-1-thread-2] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-12-15 09:33:48,316] [pool-1-thread-1] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-12-15 09:35:27,195] [pool-1-thread-8] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-12-15 09:35:46,861] [pool-1-thread-1] Initializing /data/scott/Slide133-04.tif: [testng] 09:36:00,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:36:00,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:36:00,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-15_09-36-00.log] [testng] 09:36:00,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@326385f7 - End of configuration. [testng] [2024-12-15 09:36:53,790] [pool-1-thread-1] Initializing /data/converted/converted/2chz.tif: [testng] [2024-12-15 09:37:19,880] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-12-15 09:41:14,141] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-12-15 09:43:50,315] [pool-1-thread-8] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-12-15 09:44:06,211] [pool-1-thread-1] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-12-15 09:44:10,065] [pool-1-thread-4] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-12-15 09:44:57,756] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-12-15 09:45:17,645] [pool-1-thread-8] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-12-15 09:45:47,421] [pool-1-thread-1] Initializing /data/converted/michel/c.tif: [testng] [2024-12-15 09:46:10,832] [pool-1-thread-10] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-12-15 09:46:14,836] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-12-15 09:47:09,292] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] 09:47:10,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:47:10,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:47:10,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-15_09-47-10.log] [testng] 09:47:10,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a258c - End of configuration. [testng] [2024-12-15 09:47:13,845] [pool-1-thread-4] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-12-15 09:48:20,870] [pool-1-thread-10] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-12-15 09:51:53,257] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-12-15 09:54:48,203] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-12-15 09:55:28,159] [pool-1-thread-2] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-12-15 09:55:48,689] [pool-1-thread-6] Initializing /data/converted/dietmar/138.tif: [testng] [2024-12-15 09:59:33,017] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-12-15 10:01:15,296] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-12-15 10:05:16,769] [pool-1-thread-7] Initializing /data/converted/dietmar/137.tif: [testng] [2024-12-15 10:06:13,284] [pool-1-thread-8] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-12-15 10:06:47,914] [pool-1-thread-1] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-12-15 10:08:31,729] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-12-15 10:10:31,510] [pool-1-thread-8] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-12-15 10:10:38,258] [pool-1-thread-4] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-12-15 10:11:16,848] [pool-1-thread-10] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-12-15 10:11:33,626] [pool-1-thread-3] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-12-15 10:11:39,000] [pool-1-thread-8] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-12-15 10:12:09,869] [pool-1-thread-4] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-12-15 10:12:32,246] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-12-15 10:12:43,557] [pool-1-thread-8] Initializing /data/scott/Slide133-11.tif: [testng] [2024-12-15 10:13:11,508] [pool-1-thread-6] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-12-15 10:13:27,021] [pool-1-thread-4] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-12-15 10:13:43,088] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-12-15 10:15:09,829] [pool-1-thread-4] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-12-15 10:16:07,333] [pool-1-thread-4] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-12-15 10:17:31,150] [pool-1-thread-5] Initializing /data/converted/michel/d.tif: [testng] [2024-12-15 10:17:37,549] [pool-1-thread-2] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-12-15 10:18:35,104] [pool-1-thread-5] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-12-15 10:18:39,275] [pool-1-thread-2] Initializing /data/scott/Slide133-01.tif: [testng] [2024-12-15 10:19:04,981] [pool-1-thread-10] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-12-15 10:19:24,584] [pool-1-thread-5] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-12-15 10:19:33,780] [pool-1-thread-2] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-12-15 10:20:23,929] [pool-1-thread-2] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-12-15 10:20:54,190] [pool-1-thread-5] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-12-15 10:21:00,270] [pool-1-thread-7] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-12-15 10:21:22,341] [pool-1-thread-2] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-12-15 10:21:48,856] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-12-15 10:22:22,077] [pool-1-thread-9] Initializing /data/converted/nicolas/image.tif: [testng] [2024-12-15 10:22:28,571] [pool-1-thread-2] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-12-15 10:22:51,943] [pool-1-thread-2] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-12-15 10:23:12,277] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 10:24:51,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:24:51,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:24:51,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-15_10-24-51.log] [testng] 10:24:51,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ff69f3 - End of configuration. [testng] 11:40:07,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:40:07,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:40:07,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-15_11-40-07.log] [testng] 11:40:07,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@745c285b - End of configuration. [testng] 11:41:45,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:41:45,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:45,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-15_11-41-45.log] [testng] 11:41:45,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a56f32f - End of configuration. [testng] 11:47:07,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:47:07,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:47:07,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-15_11-47-07.log] [testng] 11:47:07,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41fc5625 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 254 minutes 58 seconds Finished: SUCCESS