![[Jenkins]](/jenkins/static/f5fa13f0/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 291 originally caused by: Started by upstream project "Trigger" build number 310 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins8989329584611038563.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46047_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 08:09:21,657 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:09:21,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 08:09:21,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:09:21,659 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:09:21,659 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:09:21,659 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:09:21,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:09:21,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:09:21,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:09:21,661 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:09:21,661 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:09:21,661 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:09:21,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:09:21,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:09:21,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:09:21,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:09:21,843 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:09:21,843 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:09:21,843 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:09:21,843 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:09:21,844 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 08:09:21,845 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 08:09:21,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-15 08:09:21,853] [main] java.version = 17.0.2 [testng] 08:09:21,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:09:21,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:09:21,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-15_08-09-21.log] [testng] 08:09:21,896 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-15 08:09:21,897] [main] testng.directory = /data [testng] [2024-12-15 08:09:21,898] [main] testng.configDirectory = /config [testng] [2024-12-15 08:09:21,906] [main] testng.multiplier = 1.0 [testng] [2024-12-15 08:09:21,906] [main] testng.in-memory = false [testng] [2024-12-15 08:09:21,907] [main] testng.allow-missing = false [testng] [2024-12-15 08:09:21,907] [main] user.language = en [testng] [2024-12-15 08:09:21,907] [main] user.country = ${user.country} [testng] [2024-12-15 08:09:21,907] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-15 08:09:31,076] [main] ---------------------------------------- [testng] [2024-12-15 08:09:31,076] [main] Total files: 32 [testng] [2024-12-15 08:09:31,076] [main] Scan time: 9.169 s (286 ms/file) [testng] [2024-12-15 08:09:31,076] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-15 08:10:43,063] [pool-1-thread-1] Initializing /data/samples/Criterion.1sc: [testng] 08:10:43,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:10:43,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:10:43,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-15_08-10-43.log] [testng] 08:10:43,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3be5632a - End of configuration. [testng] [2024-12-15 08:10:44,331] [pool-1-thread-12] Initializing /data/qa-29459/bad.jpg: [testng] 08:10:44,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:10:44,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:10:44,332 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-15_08-10-44.log] [testng] 08:10:44,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@374d43a9 - End of configuration. [testng] [2024-12-15 08:10:44,727] [pool-1-thread-11] Initializing /data/david/Opened in imageJ.tiff: [testng] 08:10:44,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:10:44,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:10:44,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-15_08-10-44.log] [testng] 08:10:44,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4adbc59d - End of configuration. [testng] [2024-12-15 08:10:50,969] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] 08:10:50,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:10:50,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:10:50,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-15_08-10-50.log] [testng] 08:10:50,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21a47a4f - End of configuration. [testng] [2024-12-15 08:10:56,804] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] 08:10:56,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:10:56,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:10:56,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-15_08-10-56.log] [testng] 08:10:56,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e5a5331 - End of configuration. [testng] [2024-12-15 08:11:02,921] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] 08:11:02,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:11:02,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:11:02,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-15_08-11-02.log] [testng] 08:11:02,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79b795ae - End of configuration. [testng] [2024-12-15 08:11:04,464] [pool-1-thread-7] Initializing /data/samples/imagesEight.1sc: [testng] 08:11:04,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:11:04,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:11:04,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-15_08-11-04.log] [testng] 08:11:04,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc48a5 - End of configuration. [testng] [2024-12-15 08:11:06,076] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] 08:11:06,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:11:06,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:11:06,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-15_08-11-06.log] [testng] 08:11:06,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c3c493a - End of configuration. [testng] [2024-12-15 08:11:12,345] [pool-1-thread-5] Initializing /data/keith/test2.1sc: [testng] 08:11:12,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:11:12,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:11:12,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-15_08-11-12.log] [testng] 08:11:12,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1af6b47a - End of configuration. [testng] [2024-12-15 08:11:14,137] [pool-1-thread-4] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 08:11:14,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:11:14,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:11:14,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-15_08-11-14.log] [testng] 08:11:14,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cccfb05 - End of configuration. [testng] [2024-12-15 08:11:15,700] [pool-1-thread-3] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] 08:11:15,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:11:15,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:11:15,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-15_08-11-15.log] [testng] 08:11:15,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29aeaf55 - End of configuration. [testng] [2024-12-15 08:11:20,633] [pool-1-thread-2] Initializing /data/geert/bad example1.1sc: [testng] 08:11:20,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:11:20,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:11:20,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-15_08-11-20.log] [testng] 08:11:20,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ca02fd7 - End of configuration. [testng] [2024-12-15 08:11:37,358] [pool-1-thread-7] Initializing /data/qa-29469/good.1sc: [testng] [2024-12-15 08:11:39,752] [pool-1-thread-4] Initializing /data/qa-29459/bad.1sc: [testng] [2024-12-15 08:11:41,994] [pool-1-thread-5] Initializing /data/qa-29469/bad3.1sc: [testng] [2024-12-15 08:11:43,307] [pool-1-thread-2] Initializing /data/keith/pg020410saur3.1sc: [testng] [2024-12-15 08:11:45,253] [pool-1-thread-1] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2024-12-15 08:11:45,824] [pool-1-thread-12] Initializing /data/adrian/test_img.1sc: [testng] [2024-12-15 08:11:47,816] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-12-15 08:12:06,945] [pool-1-thread-2] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-12-15 08:12:11,030] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2024-12-15 08:12:13,336] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-12-15 08:12:15,425] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-12-15 08:12:17,625] [pool-1-thread-8] Initializing /data/keith/test.1sc: [testng] [2024-12-15 08:12:19,527] [pool-1-thread-7] Initializing /data/keith/PF020328saur v3.1sc: [testng] [2024-12-15 08:12:21,621] [pool-1-thread-1] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-12-15 08:12:22,324] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2024-12-15 08:12:30,024] [pool-1-thread-10] Initializing /data/geert/good example1.1sc: [testng] [2024-12-15 08:12:32,354] [pool-1-thread-9] Initializing /data/geert/bad example1.jpg: [testng] [2024-12-15 08:12:33,274] [pool-1-thread-3] Initializing /data/qa-29469/bad2.1sc: [testng] [2024-12-15 08:12:35,639] [pool-1-thread-11] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2024-12-15 08:12:47,419] [pool-1-thread-2] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 8 seconds Finished: SUCCESS