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Started by upstream project "BIOFORMATS-test-repo" build number 291 originally caused by: Started by upstream project "Trigger" build number 310 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins7403695107123135247.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46068_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 10:11:15,629 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 10:11:15,630 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 10:11:15,630 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:11:15,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:11:15,631 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:11:15,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:11:15,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:11:15,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:11:15,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:11:15,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:11:15,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:11:15,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:11:15,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:11:15,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:11:15,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:11:15,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:11:15,818 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:11:15,818 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:11:15,818 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:11:15,819 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:11:15,819 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 10:11:15,820 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 10:11:15,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-15 10:11:15,828] [main] java.version = 17.0.2 [testng] 10:11:15,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:11:15,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:15,869 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-15_10-11-15.log] [testng] 10:11:15,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-15 10:11:15,872] [main] testng.directory = /data [testng] [2024-12-15 10:11:15,873] [main] testng.configDirectory = /config [testng] [2024-12-15 10:11:15,881] [main] testng.multiplier = 1.0 [testng] [2024-12-15 10:11:15,882] [main] testng.in-memory = false [testng] [2024-12-15 10:11:15,882] [main] testng.allow-missing = false [testng] [2024-12-15 10:11:15,882] [main] user.language = en [testng] [2024-12-15 10:11:15,882] [main] user.country = ${user.country} [testng] [2024-12-15 10:11:15,882] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-15 10:11:21,727] [main] ---------------------------------------- [testng] [2024-12-15 10:11:21,728] [main] Total files: 17 [testng] [2024-12-15 10:11:21,728] [main] Scan time: 5.845 s (343 ms/file) [testng] [2024-12-15 10:11:21,728] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-15 10:11:29,286] [pool-1-thread-1] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 10:11:29,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:11:29,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:29,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-15_10-11-29.log] [testng] 10:11:29,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@567693f7 - End of configuration. [testng] [2024-12-15 10:11:29,686] [pool-1-thread-12] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 10:11:29,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:11:29,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:29,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-15_10-11-29.log] [testng] 10:11:29,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b3297da - End of configuration. [testng] [2024-12-15 10:11:30,059] [pool-1-thread-11] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 10:11:30,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:11:30,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:30,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-15_10-11-30.log] [testng] 10:11:30,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@477dcbe0 - End of configuration. [testng] [2024-12-15 10:11:30,459] [pool-1-thread-10] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 10:11:30,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:11:30,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:30,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-15_10-11-30.log] [testng] 10:11:30,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@413652a3 - End of configuration. [testng] [2024-12-15 10:11:30,835] [pool-1-thread-9] Initializing /data/christopher/Color48 Copy.ipm: [testng] 10:11:30,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:11:30,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:30,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-15_10-11-30.log] [testng] 10:11:30,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@317c6ae6 - End of configuration. [testng] [2024-12-15 10:11:31,273] [pool-1-thread-8] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 10:11:31,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:11:31,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:31,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-15_10-11-31.log] [testng] 10:11:31,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74789ad0 - End of configuration. [testng] [2024-12-15 10:11:31,744] [pool-1-thread-7] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 10:11:31,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:11:31,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:31,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-15_10-11-31.log] [testng] 10:11:31,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78a5b05e - End of configuration. [testng] [2024-12-15 10:11:32,159] [pool-1-thread-6] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 10:11:32,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:11:32,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:32,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-15_10-11-32.log] [testng] 10:11:32,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73a1de17 - End of configuration. [testng] [2024-12-15 10:11:32,667] [pool-1-thread-5] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 10:11:32,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:11:32,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:32,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-15_10-11-32.log] [testng] 10:11:32,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7139e823 - End of configuration. [testng] [2024-12-15 10:11:33,214] [pool-1-thread-4] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 10:11:33,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:11:33,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:33,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-15_10-11-33.log] [testng] 10:11:33,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52712091 - End of configuration. [testng] [2024-12-15 10:11:33,565] [pool-1-thread-3] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 10:11:33,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:11:33,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:33,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-15_10-11-33.log] [testng] 10:11:33,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f0e9cfc - End of configuration. [testng] [2024-12-15 10:11:33,931] [pool-1-thread-2] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 10:11:33,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:11:33,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:33,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-15_10-11-33.log] [testng] 10:11:33,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dffaa71 - End of configuration. [testng] [2024-12-15 10:11:42,589] [pool-1-thread-1] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] [2024-12-15 10:11:42,922] [pool-1-thread-6] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] [2024-12-15 10:11:43,296] [pool-1-thread-2] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] [2024-12-15 10:11:43,650] [pool-1-thread-5] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] [2024-12-15 10:11:44,038] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 35 seconds Finished: SUCCESS