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Started by upstream project "BIOFORMATS-test-repo" build number 292 originally caused by: Started by upstream project "Trigger" build number 311 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins16735255610822532186.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_46078_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:22:26,657 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:26,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:22:26,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:26,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:26,660 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:26,660 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:26,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:26,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:26,661 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:26,661 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:26,661 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:26,661 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:26,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:26,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:26,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:26,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:26,941 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:26,941 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:26,941 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:26,942 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:26,942 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:22:26,943 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:22:26,943 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-16 00:22:26,953] [main] java.version = 1.8.0_342 [testng] 00:22:26,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:26,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:27,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-16_00-22-26.log] [testng] 00:22:27,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-16 00:22:27,007] [main] testng.directory = /data [testng] [2024-12-16 00:22:27,007] [main] testng.configDirectory = /config [testng] [2024-12-16 00:22:27,019] [main] testng.multiplier = 1.0 [testng] [2024-12-16 00:22:27,019] [main] testng.in-memory = false [testng] [2024-12-16 00:22:27,019] [main] testng.allow-missing = false [testng] [2024-12-16 00:22:27,020] [main] user.language = fr [testng] [2024-12-16 00:22:27,020] [main] user.country = FR [testng] [2024-12-16 00:22:27,020] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-16 00:22:28,037] [main] ---------------------------------------- [testng] [2024-12-16 00:22:28,037] [main] Total files: 36 [testng] [2024-12-16 00:22:28,037] [main] Scan time: 1.017 s (28 ms/file) [testng] [2024-12-16 00:22:28,037] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-16 00:22:30,233] [pool-1-thread-1] Initializing /data/generated/mri-stack12.pcx: [testng] 00:22:30,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:22:30,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-16_00-22-30.log] [testng] 00:22:30,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c4d206 - End of configuration. [testng] [2024-12-16 00:22:30,302] [pool-1-thread-12] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] 00:22:30,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:22:30,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-16_00-22-30.log] [testng] 00:22:30,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10c281bf - End of configuration. [testng] [2024-12-16 00:22:30,352] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx: [testng] 00:22:30,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:22:30,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-16_00-22-30.log] [testng] 00:22:30,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1618d605 - End of configuration. [testng] [2024-12-16 00:22:30,372] [pool-1-thread-10] Initializing /data/generated/mri-stack4.pcx: [testng] 00:22:30,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:22:30,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-16_00-22-30.log] [testng] 00:22:30,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e4fde3e - End of configuration. [testng] [2024-12-16 00:22:30,392] [pool-1-thread-9] Initializing /data/generated/mri-stack6.pcx: [testng] 00:22:30,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:22:30,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-16_00-22-30.log] [testng] 00:22:30,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74932b06 - End of configuration. [testng] [2024-12-16 00:22:30,411] [pool-1-thread-8] Initializing /data/generated/mri-stack10.pcx: [testng] 00:22:30,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:22:30,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-16_00-22-30.log] [testng] 00:22:30,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37ec72b - End of configuration. [testng] [2024-12-16 00:22:30,432] [pool-1-thread-7] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 00:22:30,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:22:30,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-16_00-22-30.log] [testng] 00:22:30,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fedd6f4 - End of configuration. [testng] [2024-12-16 00:22:30,455] [pool-1-thread-6] Initializing /data/generated/mri-stack3.pcx: [testng] 00:22:30,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:22:30,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-16_00-22-30.log] [testng] 00:22:30,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19510582 - End of configuration. [testng] [2024-12-16 00:22:30,477] [pool-1-thread-5] Initializing /data/generated/mri-stack14.pcx: [testng] 00:22:30,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:22:30,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-16_00-22-30.log] [testng] 00:22:30,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250dad73 - End of configuration. [testng] [2024-12-16 00:22:30,494] [pool-1-thread-4] Initializing /data/generated/mri-stack19.pcx: [testng] 00:22:30,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:22:30,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-16_00-22-30.log] [testng] 00:22:30,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6843df60 - End of configuration. [testng] [2024-12-16 00:22:30,506] [pool-1-thread-3] Initializing /data/generated/mri-stack17.pcx: [testng] 00:22:30,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:22:30,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-16_00-22-30.log] [testng] 00:22:30,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69577c52 - End of configuration. [testng] [2024-12-16 00:22:30,521] [pool-1-thread-2] Initializing /data/generated/mri-stack7.pcx: [testng] 00:22:30,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:22:30,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:30,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-16_00-22-30.log] [testng] 00:22:30,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b7a81a6 - End of configuration. [testng] [2024-12-16 00:22:34,080] [pool-1-thread-11] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-12-16 00:22:34,093] [pool-1-thread-2] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-12-16 00:22:34,105] [pool-1-thread-9] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-12-16 00:22:34,119] [pool-1-thread-10] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-12-16 00:22:34,137] [pool-1-thread-4] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-12-16 00:22:34,150] [pool-1-thread-8] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-12-16 00:22:34,166] [pool-1-thread-1] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-12-16 00:22:34,181] [pool-1-thread-3] Initializing /data/generated/mri-stack23.pcx: [testng] [2024-12-16 00:22:34,193] [pool-1-thread-6] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-12-16 00:22:34,207] [pool-1-thread-5] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-12-16 00:22:34,227] [pool-1-thread-12] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-12-16 00:22:34,245] [pool-1-thread-7] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-12-16 00:22:38,523] [pool-1-thread-7] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-12-16 00:22:38,558] [pool-1-thread-6] Initializing /data/generated/mri-stack8.pcx: [testng] [2024-12-16 00:22:38,609] [pool-1-thread-12] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-12-16 00:22:38,623] [pool-1-thread-4] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-12-16 00:22:38,640] [pool-1-thread-11] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-12-16 00:22:38,654] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-12-16 00:22:38,668] [pool-1-thread-9] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-12-16 00:22:38,689] [pool-1-thread-3] Initializing /data/generated/mri-stack5.pcx: [testng] [2024-12-16 00:22:38,705] [pool-1-thread-2] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-12-16 00:22:39,143] [pool-1-thread-10] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-12-16 00:22:39,320] [pool-1-thread-5] Initializing /data/generated/mri-stack1.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 17 seconds Finished: SUCCESS