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Started by upstream project "BIOFORMATS-test-repo" build number 292 originally caused by: Started by upstream project "Trigger" build number 311 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins18073644514752728376.sh + '[' lim = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_46092_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:24:41,196 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:24:41,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:24:41,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:41,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:41,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:24:41,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:24:41,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:24:41,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:41,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:41,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:24:41,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:24:41,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:24:41,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:24:41,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:24:41,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:24:41,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:24:41,493 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:24:41,493 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:24:41,493 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:24:41,493 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:24:41,494 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:24:41,495 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:24:41,495 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 294 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-16 00:24:41,506] [main] java.version = 1.8.0_342 [testng] 00:24:41,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:24:41,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:41,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-16_00-24-41.log] [testng] 00:24:41,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-16 00:24:41,563] [main] testng.directory = /data [testng] [2024-12-16 00:24:41,563] [main] testng.configDirectory = /config [testng] [2024-12-16 00:24:41,575] [main] testng.multiplier = 1.0 [testng] [2024-12-16 00:24:41,575] [main] testng.in-memory = false [testng] [2024-12-16 00:24:41,576] [main] testng.allow-missing = false [testng] [2024-12-16 00:24:41,576] [main] user.language = fr [testng] [2024-12-16 00:24:41,576] [main] user.country = FR [testng] [2024-12-16 00:24:41,576] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-16 00:24:42,320] [main] ---------------------------------------- [testng] [2024-12-16 00:24:42,320] [main] Total files: 21 [testng] [2024-12-16 00:24:42,320] [main] Scan time: 0.744 s (35 ms/file) [testng] [2024-12-16 00:24:42,320] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-16 00:24:50,504] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:24:50,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:24:50,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:50,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-16_00-24-50.log] [testng] 00:24:50,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ed2ce32 - End of configuration. [testng] [2024-12-16 00:24:51,086] [pool-1-thread-12] Initializing /data/venu/Kontrolle0016.lim: [testng] 00:24:51,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:24:51,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:51,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-16_00-24-51.log] [testng] 00:24:51,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24b78ed5 - End of configuration. [testng] [2024-12-16 00:24:51,504] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:24:51,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:24:51,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:51,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-16_00-24-51.log] [testng] 00:24:51,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12133707 - End of configuration. [testng] [2024-12-16 00:24:51,882] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim: [testng] 00:24:51,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:24:51,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:51,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-16_00-24-51.log] [testng] 00:24:51,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64c15fbe - End of configuration. [testng] [2024-12-16 00:24:52,262] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim: [testng] 00:24:52,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:24:52,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:52,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-16_00-24-52.log] [testng] 00:24:52,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34ca757f - End of configuration. [testng] [2024-12-16 00:24:52,645] [pool-1-thread-8] Initializing /data/venu/Kontrolle0018.lim: [testng] 00:24:52,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:24:52,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:52,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-16_00-24-52.log] [testng] 00:24:52,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3946b1af - End of configuration. [testng] [2024-12-16 00:24:53,166] [pool-1-thread-7] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:24:53,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:24:53,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:53,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-16_00-24-53.log] [testng] 00:24:53,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20d20114 - End of configuration. [testng] [2024-12-16 00:24:53,889] [pool-1-thread-6] Initializing /data/venu/Kontrolle0008.lim: [testng] 00:24:53,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:24:53,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:53,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-16_00-24-53.log] [testng] 00:24:53,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f5303d - End of configuration. [testng] [2024-12-16 00:24:54,314] [pool-1-thread-5] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:24:54,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:24:54,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:54,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-16_00-24-54.log] [testng] 00:24:54,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20812d52 - End of configuration. [testng] [2024-12-16 00:24:54,756] [pool-1-thread-4] Initializing /data/venu/Kontrolle0004.lim: [testng] 00:24:54,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:24:54,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:54,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-16_00-24-54.log] [testng] 00:24:54,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@402a87d0 - End of configuration. [testng] [2024-12-16 00:24:55,265] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:24:55,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:24:55,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:55,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-16_00-24-55.log] [testng] 00:24:55,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@292d6ffa - End of configuration. [testng] [2024-12-16 00:24:55,796] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:24:55,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:24:55,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:55,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-16_00-24-55.log] [testng] 00:24:55,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46320e52 - End of configuration. [testng] [2024-12-16 00:25:03,988] [pool-1-thread-3] Initializing /data/venu/Kontrolle0020.lim: [testng] [2024-12-16 00:25:04,444] [pool-1-thread-2] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-12-16 00:25:04,907] [pool-1-thread-1] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-12-16 00:25:05,738] [pool-1-thread-6] Initializing /data/venu/Kontrolle0021.lim: [testng] [2024-12-16 00:25:06,589] [pool-1-thread-12] Initializing /data/venu/Kontrolle0017.lim: [testng] [2024-12-16 00:25:07,170] [pool-1-thread-9] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-12-16 00:25:07,816] [pool-1-thread-11] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-12-16 00:25:08,257] [pool-1-thread-10] Initializing /data/venu/Kontrolle0012.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 36 seconds Finished: SUCCESS