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Started by upstream project "BIOFORMATS-test-repo" build number 292 originally caused by: Started by upstream project "Trigger" build number 311 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins6711103518307600747.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_46162_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:12:04,514 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:12:04,516 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:12:04,516 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:12:04,517 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:12:04,517 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:12:04,517 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:12:04,517 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:12:04,517 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:12:04,518 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:12:04,518 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:12:04,518 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:12:04,518 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:12:04,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:12:04,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:12:04,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:12:04,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:12:04,775 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:12:04,775 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:12:04,775 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:12:04,776 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:12:04,776 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:12:04,777 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:12:04,777 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-16 03:12:04,786] [main] java.version = 1.8.0_342 [testng] 03:12:04,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:12:04,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:04,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-16_03-12-04.log] [testng] 03:12:04,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-16 03:12:04,837] [main] testng.directory = /data [testng] [2024-12-16 03:12:04,837] [main] testng.configDirectory = /config [testng] [2024-12-16 03:12:04,849] [main] testng.multiplier = 1.0 [testng] [2024-12-16 03:12:04,849] [main] testng.in-memory = false [testng] [2024-12-16 03:12:04,849] [main] testng.allow-missing = false [testng] [2024-12-16 03:12:04,849] [main] user.language = fr [testng] [2024-12-16 03:12:04,849] [main] user.country = FR [testng] [2024-12-16 03:12:04,849] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-16 03:28:05,598] [main] ---------------------------------------- [testng] [2024-12-16 03:28:05,599] [main] Total files: 7329 [testng] [2024-12-16 03:28:05,599] [main] Scan time: 960.749 s (131 ms/file) [testng] [2024-12-16 03:28:05,599] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-16 03:49:52,001] [pool-1-thread-1] Initializing /data/ascb/golgi marker.tif: [testng] 03:49:52,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:49:52,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:49:52,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-16_03-49-52.log] [testng] 03:49:52,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@792632fe - End of configuration. [testng] [2024-12-16 03:49:55,692] [pool-1-thread-12] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 03:49:55,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:49:55,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:49:55,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-16_03-49-55.log] [testng] 03:49:55,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77f4c379 - End of configuration. [testng] [2024-12-16 03:49:59,260] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] 03:49:59,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:49:59,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:49:59,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-16_03-49-59.log] [testng] 03:49:59,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ca533ba - End of configuration. [testng] [2024-12-16 03:50:02,508] [pool-1-thread-10] Initializing /data/pang/z-stack/Z Series.tif: [testng] 03:50:02,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:50:02,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:02,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-16_03-50-02.log] [testng] 03:50:02,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@707b9802 - End of configuration. [testng] [2024-12-16 03:50:05,540] [pool-1-thread-9] Initializing /data/chris/Stream-2(partial).stk: [testng] 03:50:05,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:50:05,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:05,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-16_03-50-05.log] [testng] 03:50:05,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64db46e2 - End of configuration. [testng] [2024-12-16 03:50:13,646] [pool-1-thread-8] Initializing /data/thomas/test.tif: [testng] 03:50:13,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:50:13,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:13,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-16_03-50-13.log] [testng] 03:50:13,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d3c07ba - End of configuration. [testng] [2024-12-16 03:50:17,489] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] 03:50:17,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:50:17,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:17,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-16_03-50-17.log] [testng] 03:50:17,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dca7a1 - End of configuration. [testng] [2024-12-16 03:50:53,133] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] 03:50:53,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:50:53,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:53,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-16_03-50-53.log] [testng] 03:50:53,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ba3582d - End of configuration. [testng] [2024-12-16 03:50:55,315] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] 03:50:55,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:50:55,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:55,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-16_03-50-55.log] [testng] 03:50:55,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fe5b52c - End of configuration. [testng] [2024-12-16 03:50:58,803] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] 03:50:58,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:50:58,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:58,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-16_03-50-58.log] [testng] 03:50:58,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ec3d7a7 - End of configuration. [testng] [2024-12-16 03:51:01,967] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] 03:51:01,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:51:01,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:01,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-16_03-51-01.log] [testng] 03:51:01,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38585791 - End of configuration. [testng] [2024-12-16 03:51:04,503] [pool-1-thread-3] Used files list does not include base file [testng] [2024-12-16 03:51:04,506] [pool-1-thread-2] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] 03:51:04,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:51:04,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:04,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-16_03-51-04.log] [testng] 03:51:04,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5868bba7 - End of configuration. [testng] [2024-12-16 03:51:26,442] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-12-16 03:51:30,635] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-12-16 03:51:36,388] [pool-1-thread-10] Used files list does not include base file [testng] [2024-12-16 03:51:36,390] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-12-16 03:51:40,786] [pool-1-thread-5] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-12-16 03:51:50,432] [pool-1-thread-2] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-12-16 03:51:54,595] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-16 03:51:57,978] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-12-16 03:52:01,999] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-12-16 03:52:31,447] [pool-1-thread-3] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-12-16 03:52:36,932] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-12-16 03:52:41,777] [pool-1-thread-12] Initializing /data/alex/Selected FITC.stk: [testng] [2024-12-16 03:52:45,273] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-12-16 03:52:50,670] [pool-1-thread-9] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-12-16 03:53:05,628] [pool-1-thread-1] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-12-16 03:53:09,931] [pool-1-thread-3] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-12-16 03:53:22,211] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-12-16 03:53:28,156] [pool-1-thread-12] Used files list does not include base file [testng] [2024-12-16 03:53:31,737] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-12-16 03:53:42,473] [pool-1-thread-4] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-12-16 03:53:55,265] [pool-1-thread-2] Initializing /data/samples/diatoms3d.stk: [testng] [2024-12-16 03:54:08,322] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-16 03:54:17,294] [pool-1-thread-8] Initializing /data/josh/2101to800.stk: [testng] [2024-12-16 03:54:42,322] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-16 03:54:53,528] [pool-1-thread-4] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-12-16 03:55:02,184] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-12-16 03:55:10,021] [pool-1-thread-6] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-12-16 03:55:49,967] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-12-16 03:55:54,575] [pool-1-thread-3] Initializing /data/josh/2101to600e.stk: [testng] [2024-12-16 03:56:16,735] [pool-1-thread-10] Initializing /data/samples/zserEight.stk: [testng] [2024-12-16 03:56:21,371] [pool-1-thread-2] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-12-16 03:58:06,501] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-12-16 03:58:47,926] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-12-16 03:59:07,138] [pool-1-thread-10] Used files list does not include base file [testng] [2024-12-16 03:59:07,207] [pool-1-thread-1] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-12-16 03:59:16,336] [pool-1-thread-7] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-12-16 03:59:33,148] [pool-1-thread-12] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-12-16 04:00:13,619] [pool-1-thread-4] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-12-16 04:00:49,684] [pool-1-thread-12] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-12-16 04:01:25,360] [pool-1-thread-8] Initializing /data/josh/2101to400astk.stk: [testng] [2024-12-16 04:02:07,452] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-12-16 04:02:19,695] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-16 04:02:32,916] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-12-16 04:02:38,087] [pool-1-thread-6] Used files list does not include base file [testng] [2024-12-16 04:02:43,863] [pool-1-thread-4] Initializing /data/qa-16887/m-01.tif: [testng] [2024-12-16 04:02:48,730] [pool-1-thread-7] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-12-16 04:02:53,241] [pool-1-thread-3] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-12-16 04:03:14,534] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-12-16 04:03:19,104] [pool-1-thread-1] Used files list does not include base file [testng] [2024-12-16 04:03:21,268] [pool-1-thread-3] Initializing /data/qa-16915/m-04.tif: [testng] [2024-12-16 04:03:28,007] [pool-1-thread-9] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-12-16 04:03:34,068] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-12-16 04:03:39,442] [pool-1-thread-7] Used files list does not include base file [testng] [2024-12-16 04:03:39,443] [pool-1-thread-4] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-12-16 04:04:01,854] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-12-16 04:04:08,182] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-12-16 04:04:12,007] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-12-16 04:04:21,213] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-12-16 04:04:25,386] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-12-16 04:04:44,695] [pool-1-thread-3] Initializing /data/steve/Experiment2.stk: [testng] [2024-12-16 04:04:59,068] [pool-1-thread-12] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-12-16 04:05:03,428] [pool-1-thread-1] Initializing 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Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-12-16 04:06:40,882] [pool-1-thread-3] Used files list does not include base file [testng] [2024-12-16 04:06:46,071] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-12-16 04:06:49,860] [pool-1-thread-9] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-12-16 04:06:53,593] [pool-1-thread-4] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-12-16 04:07:06,102] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-16 04:07:10,322] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-12-16 04:07:21,399] [pool-1-thread-7] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-12-16 04:07:25,508] [pool-1-thread-6] Initializing /data/josh/2101to600b.stk: [testng] [2024-12-16 04:07:54,138] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-12-16 04:07:54,620] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-12-16 04:08:09,344] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-12-16 04:08:31,950] [pool-1-thread-4] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-12-16 04:08:35,554] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-12-16 04:08:39,108] [pool-1-thread-8] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-12-16 04:08:46,942] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-12-16 04:08:54,393] [pool-1-thread-11] Initializing 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04:12:58,566] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-12-16 04:13:04,705] [pool-1-thread-6] Used files list does not include base file [testng] [2024-12-16 04:13:09,920] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-12-16 04:13:30,400] [pool-1-thread-12] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-12-16 04:13:37,516] [pool-1-thread-3] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-12-16 04:14:08,094] [pool-1-thread-8] Initializing /data/samples/zseries.stk: [testng] [2024-12-16 04:14:27,067] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-12-16 04:14:30,847] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-12-16 04:14:33,985] [pool-1-thread-4] Used files list does not include base file [testng] [2024-12-16 04:14:33,985] [pool-1-thread-3] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-12-16 04:14:47,357] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-12-16 04:15:03,259] [pool-1-thread-12] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-12-16 04:15:07,015] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-12-16 04:15:15,394] [pool-1-thread-3] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-12-16 04:15:24,425] [pool-1-thread-8] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-12-16 04:15:35,640] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-16 04:15:38,983] [pool-1-thread-4] Initializing /data/jerome/deconv.STK: [testng] [2024-12-16 04:15:42,740] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-12-16 04:15:49,336] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-12-16 04:15:53,090] [pool-1-thread-7] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-12-16 04:16:08,075] [pool-1-thread-4] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-12-16 04:16:18,598] [pool-1-thread-12] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-12-16 04:16:22,716] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-12-16 04:16:27,868] [pool-1-thread-9] Used files list does not include base file [testng] [2024-12-16 04:16:27,942] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-12-16 04:16:30,958] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-16 04:16:48,284] [pool-1-thread-12] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-12-16 04:17:02,405] [pool-1-thread-6] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-12-16 04:17:16,338] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-12-16 04:17:20,104] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-16 04:17:23,957] [pool-1-thread-11] Initializing /data/jae/RGB_s34.tif: [testng] [2024-12-16 04:17:35,769] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-12-16 04:17:50,836] [pool-1-thread-10] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-12-16 04:17:54,058] [pool-1-thread-3] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-12-16 04:18:24,240] [pool-1-thread-11] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-12-16 04:18:31,274] [pool-1-thread-10] Initializing /data/thomas/t_test2001.tif: [testng] [2024-12-16 04:18:38,381] [pool-1-thread-7] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-12-16 04:18:45,604] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-16 04:18:57,969] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-12-16 04:19:01,361] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-12-16 04:19:05,791] [pool-1-thread-10] Used files list does not include base file [testng] [2024-12-16 04:19:09,172] [pool-1-thread-7] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-12-16 04:19:18,207] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-12-16 04:20:03,046] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-12-16 04:20:07,291] [pool-1-thread-6] Used files list does not include base file [testng] [2024-12-16 04:20:07,486] [pool-1-thread-9] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-12-16 04:20:12,424] [pool-1-thread-8] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-12-16 04:21:06,871] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-12-16 04:21:20,662] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-12-16 04:21:24,296] [pool-1-thread-5] Initializing /data/aaron/metamorph.stk: [testng] [2024-12-16 04:21:35,906] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-12-16 04:21:49,996] [pool-1-thread-5] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-12-16 04:21:53,702] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-12-16 04:22:05,055] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-12-16 04:22:13,475] [pool-1-thread-9] Initializing /data/cumol-test-series/23.001: [testng] [2024-12-16 04:22:21,627] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-16 04:22:25,886] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-12-16 04:22:38,242] [pool-1-thread-10] Initializing /data/samples/10xcalib.stk: [testng] [2024-12-16 04:22:54,105] [pool-1-thread-4] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-12-16 04:23:00,611] [pool-1-thread-7] Initializing /data/josh/2101to600f.stk: [testng] [2024-12-16 04:23:48,904] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-12-16 04:23:52,689] [pool-1-thread-10] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-12-16 04:24:11,591] [pool-1-thread-5] Initializing /data/ascb/mt aim.tif: [testng] [2024-12-16 04:24:19,166] [pool-1-thread-6] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-12-16 04:24:25,619] [pool-1-thread-10] Initializing /data/qa-16915/m-02.tif: [testng] [2024-12-16 04:24:39,793] [pool-1-thread-4] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-12-16 04:24:47,019] [pool-1-thread-5] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-12-16 04:25:02,888] [pool-1-thread-9] Initializing /data/josh/2101to600astk.stk: [testng] [2024-12-16 04:26:17,011] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-12-16 04:26:19,527] [pool-1-thread-11] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-12-16 04:26:31,162] [pool-1-thread-4] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-12-16 04:26:43,499] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-12-16 04:26:49,220] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-12-16 04:27:05,896] [pool-1-thread-4] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-12-16 04:27:18,607] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-16 04:27:21,813] [pool-1-thread-10] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-12-16 04:27:40,773] [pool-1-thread-4] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-12-16 04:29:10,516] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-12-16 04:29:35,973] [pool-1-thread-10] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-12-16 04:29:40,723] [pool-1-thread-11] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-12-16 04:29:52,651] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-16 04:30:18,390] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-12-16 04:30:44,795] [pool-1-thread-11] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-12-16 04:31:09,774] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-12-16 04:32:03,141] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-12-16 04:32:37,593] [pool-1-thread-7] Initializing /data/grant/X.STK: [testng] [2024-12-16 04:32:42,937] [pool-1-thread-10] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-12-16 04:33:29,271] [pool-1-thread-7] Initializing /data/david/tl4.tif: [testng] [2024-12-16 04:34:07,559] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-12-16 04:34:13,235] [pool-1-thread-6] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-12-16 04:34:18,127] [pool-1-thread-7] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-12-16 04:35:33,309] [pool-1-thread-10] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-12-16 04:35:39,170] [pool-1-thread-5] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-12-16 04:36:11,452] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-12-16 04:36:22,557] [pool-1-thread-10] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-12-16 04:36:26,985] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-16 04:36:42,624] [pool-1-thread-6] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-12-16 04:36:51,899] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-12-16 04:37:23,989] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-12-16 04:37:39,259] [pool-1-thread-10] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-12-16 04:37:54,870] [pool-1-thread-11] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-12-16 04:38:00,076] [pool-1-thread-5] Initializing /data/samples/zser24.stk: [testng] [2024-12-16 04:38:37,865] [pool-1-thread-11] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-12-16 04:38:44,630] [pool-1-thread-5] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-12-16 04:39:13,545] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-12-16 04:39:27,725] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-12-16 04:39:53,348] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-12-16 04:40:20,691] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-12-16 04:40:26,527] [pool-1-thread-11] Initializing /data/steve/Experiment2.tif: [testng] 10:57:21,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:57:21,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:57:21,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-16_10-57-21.log] [testng] 10:57:21,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5568527 - End of configuration. [testng] 11:00:35,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:00:35,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:00:35,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-16_11-00-35.log] [testng] 11:00:35,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a257aa0 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 468 minutes 36 seconds Finished: SUCCESS