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Started by upstream project "BIOFORMATS-test-repo" build number 292 originally caused by: Started by upstream project "Trigger" build number 311 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins4883192755836116342.sh + '[' cellr = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_46227_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:24:15,501 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:24:15,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 09:24:15,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:24:15,503 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:24:15,504 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:24:15,504 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:24:15,504 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:24:15,504 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:24:15,505 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:24:15,505 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:24:15,505 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:24:15,505 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:24:15,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:24:15,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:24:15,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:24:15,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:24:15,767 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:24:15,767 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:24:15,767 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:24:15,767 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:24:15,767 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 09:24:15,768 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 09:24:15,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 263 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-16 09:24:15,778] [main] java.version = 1.8.0_342 [testng] 09:24:15,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:24:15,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:24:15,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-16_09-24-15.log] [testng] 09:24:15,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-16 09:24:15,830] [main] testng.directory = /data [testng] [2024-12-16 09:24:15,830] [main] testng.configDirectory = /config [testng] [2024-12-16 09:24:15,842] [main] testng.multiplier = 1.0 [testng] [2024-12-16 09:24:15,842] [main] testng.in-memory = false [testng] [2024-12-16 09:24:15,842] [main] testng.allow-missing = false [testng] [2024-12-16 09:24:15,842] [main] user.language = fr [testng] [2024-12-16 09:24:15,842] [main] user.country = FR [testng] [2024-12-16 09:24:15,843] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-16 09:27:43,011] [main] ---------------------------------------- [testng] [2024-12-16 09:27:43,012] [main] Total files: 256 [testng] [2024-12-16 09:27:43,012] [main] Scan time: 207.168 s (809 ms/file) [testng] [2024-12-16 09:27:43,012] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-16 09:36:48,747] [pool-1-thread-1] Initializing /data/viktorie/090902/090902_d.mtb: [testng] 09:36:48,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:36:48,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:36:48,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-16_09-36-48.log] [testng] 09:36:48,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6191e2e1 - End of configuration. [testng] [2024-12-16 09:36:50,239] [pool-1-thread-12] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: [testng] 09:36:50,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:36:50,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:36:50,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-16_09-36-50.log] [testng] 09:36:50,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@304dc180 - End of configuration. [testng] [2024-12-16 09:36:52,081] [pool-1-thread-11] Initializing /data/clare/set_27_on_d.mtb: [testng] 09:36:52,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:36:52,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:36:52,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-16_09-36-52.log] [testng] 09:36:52,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ae6db23 - End of configuration. [testng] [2024-12-16 09:36:54,125] [pool-1-thread-10] Initializing /data/qa-17107/example2/example2_d.mtb: [testng] 09:36:54,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:36:54,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:36:54,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-16_09-36-54.log] [testng] 09:36:54,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bc7e0fd - End of configuration. [testng] [2024-12-16 09:36:55,751] [pool-1-thread-9] Initializing /data/viktorie/test/test_d.mtb: [testng] 09:36:55,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:36:55,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:36:55,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-16_09-36-55.log] [testng] 09:36:55,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d87fef8 - End of configuration. [testng] [2024-12-16 09:36:57,203] [pool-1-thread-8] Initializing /data/viktorie/Structure.jpg: [testng] 09:36:57,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:36:57,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:36:57,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-16_09-36-57.log] [testng] 09:36:57,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67fa8117 - End of configuration. [testng] [2024-12-16 09:36:57,544] [pool-1-thread-7] Initializing /data/viktorie/2Channels.tif: [testng] 09:36:57,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:36:57,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:36:57,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-16_09-36-57.log] [testng] 09:36:57,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bef43b6 - End of configuration. [testng] [2024-12-16 09:37:00,936] [pool-1-thread-6] Initializing /data/colin/08-10-09/08-10-09_d.mtb: [testng] 09:37:00,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:37:00,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:00,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-16_09-37-00.log] [testng] 09:37:00,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9eec95 - End of configuration. [testng] [2024-12-16 09:37:06,052] [pool-1-thread-5] Initializing /data/kees/Mariaelena_d.mtb: [testng] 09:37:06,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:37:06,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:06,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-16_09-37-06.log] [testng] 09:37:06,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@797a0384 - End of configuration. [testng] [2024-12-16 09:37:09,478] [pool-1-thread-4] Initializing /data/colin/07-06-21/07-06-21_d.mtb: [testng] 09:37:09,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:37:09,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:09,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-16_09-37-09.log] [testng] 09:37:09,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c0c9ecf - End of configuration. [testng] [2024-12-16 09:37:11,156] [pool-1-thread-3] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: [testng] 09:37:11,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:37:11,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:11,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-16_09-37-11.log] [testng] 09:37:11,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49f0636a - End of configuration. [testng] [2024-12-16 09:37:12,678] [pool-1-thread-2] Initializing /data/qa-17107/plain/Plain_d.mtb: [testng] 09:37:12,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:37:12,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:12,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-16_09-37-12.log] [testng] 09:37:12,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4717f2d2 - End of configuration. [testng] [2024-12-16 09:37:23,383] [pool-1-thread-8] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 17 minutes 25 seconds Finished: SUCCESS