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Started by upstream project "BIOFORMATS-test-repo" build number 293 originally caused by: Started by upstream project "Trigger" build number 312 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins5808319221501611599.sh + '[' targa = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46280_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:04:39,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:04:39,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 01:04:39,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:04:39,762 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:04:39,762 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:04:39,763 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:04:39,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:04:39,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:04:39,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:04:39,764 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:04:39,764 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:04:39,765 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:04:39,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:04:39,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:04:39,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:04:39,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:04:39,963 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:04:39,963 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:04:39,963 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:04:39,964 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:04:39,964 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 01:04:39,964 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 01:04:39,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-17 01:04:39,973] [main] java.version = 11.0.16 [testng] 01:04:39,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:04:39,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:04:40,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-17_01-04-39.log] [testng] 01:04:40,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-17 01:04:40,022] [main] testng.directory = /data [testng] [2024-12-17 01:04:40,022] [main] testng.configDirectory = /config [testng] [2024-12-17 01:04:40,032] [main] testng.multiplier = 1.0 [testng] [2024-12-17 01:04:40,033] [main] testng.in-memory = false [testng] [2024-12-17 01:04:40,033] [main] testng.allow-missing = false [testng] [2024-12-17 01:04:40,033] [main] user.language = en [testng] [2024-12-17 01:04:40,033] [main] user.country = ${user.country} [testng] [2024-12-17 01:04:40,033] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-17 01:04:41,016] [main] ---------------------------------------- [testng] [2024-12-17 01:04:41,016] [main] Total files: 21 [testng] [2024-12-17 01:04:41,016] [main] Scan time: 0.983 s (46 ms/file) [testng] [2024-12-17 01:04:41,016] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-17 01:05:02,300] [pool-1-thread-1] Initializing /data/samples/XING_B24.TGA: [testng] 01:05:02,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:05:02,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:02,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-17_01-05-02.log] [testng] 01:05:02,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19393d4c - End of configuration. [testng] [2024-12-17 01:05:03,850] [pool-1-thread-12] Initializing /data/samples/MARBLES.TGA: [testng] 01:05:03,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:05:03,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:03,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-17_01-05-03.log] [testng] 01:05:03,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f4bb610 - End of configuration. [testng] [2024-12-17 01:05:04,743] [pool-1-thread-11] Initializing /data/samples/CTC16.TGA: [testng] 01:05:04,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:05:04,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:04,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-17_01-05-04.log] [testng] 01:05:04,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@210ec31b - End of configuration. [testng] [2024-12-17 01:05:05,924] [pool-1-thread-10] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:05:05,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:05:05,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:05,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-17_01-05-05.log] [testng] 01:05:05,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7efbf54a - End of configuration. [testng] [2024-12-17 01:05:06,619] [pool-1-thread-9] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:05:06,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:05:06,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:06,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-17_01-05-06.log] [testng] 01:05:06,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@153f88b6 - End of configuration. [testng] [2024-12-17 01:05:07,917] [pool-1-thread-8] Initializing /data/samples/UCM8.TGA: [testng] 01:05:07,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:05:07,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:07,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-17_01-05-07.log] [testng] 01:05:07,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2973fbc3 - End of configuration. [testng] [2024-12-17 01:05:08,630] [pool-1-thread-7] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:05:08,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:05:08,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:08,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-17_01-05-08.log] [testng] 01:05:08,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e7ce355 - End of configuration. [testng] [2024-12-17 01:05:10,270] [pool-1-thread-6] Initializing /data/samples/XING_T32.TGA: [testng] 01:05:10,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:05:10,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:10,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-17_01-05-10.log] [testng] 01:05:10,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58751953 - End of configuration. [testng] [2024-12-17 01:05:10,979] [pool-1-thread-5] Initializing /data/samples/UTC24.TGA: [testng] 01:05:10,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:05:10,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:10,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-17_01-05-10.log] [testng] 01:05:10,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@716239e6 - End of configuration. [testng] [2024-12-17 01:05:12,129] [pool-1-thread-4] Initializing /data/samples/CCM8.TGA: [testng] 01:05:12,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:05:12,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:12,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-17_01-05-12.log] [testng] 01:05:12,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64ac3335 - End of configuration. [testng] [2024-12-17 01:05:12,998] [pool-1-thread-3] Initializing /data/samples/CBW8.TGA: [testng] 01:05:12,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:05:12,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:12,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-17_01-05-12.log] [testng] 01:05:12,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e5b013c - End of configuration. [testng] [2024-12-17 01:05:14,696] [pool-1-thread-2] Initializing /data/samples/CTC24.TGA: [testng] 01:05:14,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:05:14,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:14,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-17_01-05-14.log] [testng] 01:05:14,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54ffcecd - End of configuration. [testng] [2024-12-17 01:05:25,490] [pool-1-thread-4] Initializing /data/samples/XING_B32.TGA: [testng] [2024-12-17 01:05:26,779] [pool-1-thread-7] Initializing /data/samples/UTC32.TGA: [testng] [2024-12-17 01:05:27,472] [pool-1-thread-9] Initializing /data/samples/FLAG_B24.TGA: [testng] [2024-12-17 01:05:28,073] [pool-1-thread-5] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-12-17 01:05:29,098] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] [2024-12-17 01:05:29,687] [pool-1-thread-10] Initializing /data/samples/XING_B16.TGA: [testng] [2024-12-17 01:05:30,235] [pool-1-thread-11] Initializing /data/samples/UTC16.TGA: [testng] [2024-12-17 01:05:31,448] [pool-1-thread-6] Initializing /data/samples/UBW8.TGA: [testng] [2024-12-17 01:05:32,188] [pool-1-thread-1] Initializing /data/samples/XING_T16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 4 seconds Finished: SUCCESS