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Started by upstream project "BIOFORMATS-test-repo" build number 293 originally caused by: Started by upstream project "Trigger" build number 312 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5445569956095678552.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46284_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:17:33,124 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:17:33,126 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 01:17:33,126 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:17:33,127 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:17:33,127 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:17:33,128 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:17:33,128 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:17:33,128 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:17:33,128 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:17:33,129 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:17:33,129 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:17:33,130 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:17:33,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:17:33,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:17:33,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:17:33,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:17:33,335 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:17:33,335 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:17:33,335 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:17:33,335 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:17:33,335 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 01:17:33,336 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 01:17:33,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 208 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-17 01:17:33,345] [main] java.version = 11.0.16 [testng] 01:17:33,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:17:33,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:17:33,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-17_01-17-33.log] [testng] 01:17:33,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-17 01:17:33,403] [main] testng.directory = /data [testng] [2024-12-17 01:17:33,404] [main] testng.configDirectory = /config [testng] [2024-12-17 01:17:33,414] [main] testng.multiplier = 1.0 [testng] [2024-12-17 01:17:33,415] [main] testng.in-memory = false [testng] [2024-12-17 01:17:33,415] [main] testng.allow-missing = false [testng] [2024-12-17 01:17:33,415] [main] user.language = en [testng] [2024-12-17 01:17:33,415] [main] user.country = ${user.country} [testng] [2024-12-17 01:17:33,415] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-17 01:19:19,822] [main] ---------------------------------------- [testng] [2024-12-17 01:19:19,822] [main] Total files: 259 [testng] [2024-12-17 01:19:19,822] [main] Scan time: 106.406 s (410 ms/file) [testng] [2024-12-17 01:19:19,822] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-17 02:44:48,981] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] 02:44:48,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:44:48,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:48,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-17_02-44-48.log] [testng] 02:44:48,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6694eed8 - End of configuration. [testng] [2024-12-17 02:44:51,043] [pool-1-thread-12] Initializing /data/glen/singleseqline.oif: [testng] 02:44:51,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:44:51,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:51,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-17_02-44-51.log] [testng] 02:44:51,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20cac9c1 - End of configuration. [testng] [2024-12-17 02:44:54,101] [pool-1-thread-11] Initializing /data/molly/11OCT5.OIF: [testng] 02:44:54,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:44:54,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:54,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-17_02-44-54.log] [testng] 02:44:54,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48e75fcb - End of configuration. [testng] [2024-12-17 02:45:23,653] [pool-1-thread-10] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 02:45:23,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:45:23,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:23,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-17_02-45-23.log] [testng] 02:45:23,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31c32108 - End of configuration. [testng] [2024-12-17 02:45:32,742] [pool-1-thread-9] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] 02:45:32,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:45:32,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:32,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-17_02-45-32.log] [testng] 02:45:32,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@545f064d - End of configuration. [testng] [2024-12-17 02:45:33,068] [pool-1-thread-8] Initializing /data/johannes/step2.bmp: [testng] 02:45:33,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:45:33,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:33,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-17_02-45-33.log] [testng] 02:45:33,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57731afd - End of configuration. [testng] [2024-12-17 02:45:33,351] [pool-1-thread-7] Initializing /data/aryeh/1h_after_pdt.oib: [testng] 02:45:33,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:45:33,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:33,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-17_02-45-33.log] [testng] 02:45:33,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@172fc446 - End of configuration. [testng] [2024-12-17 02:45:45,401] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] 02:45:45,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:45:45,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:45,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-17_02-45-45.log] [testng] 02:45:45,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45497d2f - End of configuration. [testng] [2024-12-17 02:45:47,831] [pool-1-thread-5] Initializing /data/marc/V0606J.oib: [testng] 02:45:47,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:45:47,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:47,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-17_02-45-47.log] [testng] 02:45:47,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@453f3046 - End of configuration. [testng] [2024-12-17 02:45:50,353] [pool-1-thread-4] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] 02:45:50,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:45:50,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:50,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-17_02-45-50.log] [testng] 02:45:50,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fa20c79 - End of configuration. [testng] [2024-12-17 02:45:51,480] [pool-1-thread-3] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] 02:45:51,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:45:51,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:51,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-17_02-45-51.log] [testng] 02:45:51,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ca7e0f9 - End of configuration. [testng] [2024-12-17 02:46:00,121] [pool-1-thread-2] Initializing /data/brian/FLIP.oib: [testng] 02:46:00,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:46:00,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:00,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-17_02-46-00.log] [testng] 02:46:00,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6593568b - End of configuration. [testng] [2024-12-17 02:46:05,540] [pool-1-thread-9] Initializing /data/glen/notsaturated.oib: [testng] [2024-12-17 02:46:07,178] [pool-1-thread-8] Initializing /data/michael/CELL3.oib: [testng] [2024-12-17 02:46:11,287] [pool-1-thread-4] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-12-17 02:46:12,969] [pool-1-thread-1] Initializing /data/glen/Null file/test change.oif: [testng] [2024-12-17 02:46:14,547] [pool-1-thread-2] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-12-17 02:46:19,340] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-12-17 02:46:25,819] [pool-1-thread-9] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-12-17 02:46:27,377] [pool-1-thread-8] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-12-17 02:46:29,921] [pool-1-thread-5] Initializing /data/christian/20min.oif: [testng] [2024-12-17 02:46:32,067] [pool-1-thread-4] Initializing /data/simon/used_to_work.oib: [testng] [2024-12-17 02:46:37,048] [pool-1-thread-7] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-12-17 02:46:39,542] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-12-17 02:46:41,579] [pool-1-thread-9] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-12-17 02:46:42,772] [pool-1-thread-3] Initializing /data/monica/Image0056.oif: [testng] [2024-12-17 02:46:44,548] [pool-1-thread-8] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-12-17 02:46:50,492] [pool-1-thread-4] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-12-17 02:46:52,327] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-12-17 02:46:54,649] [pool-1-thread-6] Initializing /data/johannes/step1.bmp: [testng] [2024-12-17 02:46:55,048] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-12-17 02:46:57,034] [pool-1-thread-8] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-12-17 02:46:59,963] [pool-1-thread-6] Initializing /data/molly/11OCT4.OIF: [testng] [2024-12-17 02:47:24,441] [pool-1-thread-4] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-12-17 02:47:27,730] [pool-1-thread-7] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-12-17 02:47:30,948] [pool-1-thread-9] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-12-17 02:47:33,986] [pool-1-thread-8] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-12-17 02:47:42,287] [pool-1-thread-5] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-12-17 02:47:44,223] [pool-1-thread-12] Initializing /data/marc/V0606L.oib: [testng] [2024-12-17 02:47:47,249] [pool-1-thread-4] Initializing /data/molly/11OCT2.OIF: [testng] [2024-12-17 02:48:41,190] [pool-1-thread-1] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-12-17 02:48:42,872] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-12-17 02:48:44,849] [pool-1-thread-5] Initializing /data/molly/11OCT10.OIF: [testng] [2024-12-17 02:49:19,543] [pool-1-thread-3] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-12-17 02:49:24,402] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-12-17 02:49:27,783] [pool-1-thread-7] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-12-17 02:49:44,769] [pool-1-thread-9] Initializing /data/glen/seqlinestack.oib: [testng] [2024-12-17 02:49:47,054] [pool-1-thread-12] Initializing /data/glen/singleseqline.oib: [testng] [2024-12-17 02:49:49,647] [pool-1-thread-3] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-12-17 02:49:54,963] [pool-1-thread-1] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-12-17 02:49:58,457] [pool-1-thread-9] Initializing /data/glen/singleseqframe.oib: [testng] [2024-12-17 02:49:59,630] [pool-1-thread-12] Initializing /data/glen/singlesimul.oib: [testng] [2024-12-17 02:50:02,741] [pool-1-thread-3] Initializing /data/kay/IM2pg.oib: [testng] [2024-12-17 02:50:07,236] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-12-17 02:50:09,126] [pool-1-thread-1] Initializing /data/aryeh/1h.oib: [testng] [2024-12-17 02:50:12,005] [pool-1-thread-12] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-12-17 02:50:15,517] [pool-1-thread-3] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-12-17 02:50:20,822] [pool-1-thread-9] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-12-17 02:50:27,759] [pool-1-thread-12] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-12-17 02:50:31,507] [pool-1-thread-1] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-12-17 02:50:35,888] [pool-1-thread-3] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-12-17 02:50:40,488] [pool-1-thread-12] Initializing /data/johannes/step5b.bmp: [testng] [2024-12-17 02:50:42,608] [pool-1-thread-1] Initializing /data/johannes/step3.bmp: [testng] [2024-12-17 02:50:44,654] [pool-1-thread-12] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-12-17 02:50:50,947] [pool-1-thread-3] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-12-17 02:51:01,677] [pool-1-thread-1] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-12-17 02:51:12,177] [pool-1-thread-12] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-12-17 02:51:17,767] [pool-1-thread-3] Initializing /data/glen/singlesimul.oif: [testng] [2024-12-17 02:53:10,503] [pool-1-thread-3] Initializing /data/glen/4205basal106072.oif: [testng] [2024-12-17 02:56:21,966] [pool-1-thread-9] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-12-17 02:56:31,751] [pool-1-thread-9] Initializing /data/molly/11OCT3.OIF: [testng] [2024-12-17 03:00:54,717] [pool-1-thread-12] Initializing /data/molly/11OCT7.OIF: [testng] [2024-12-17 03:13:11,904] [pool-1-thread-10] Initializing /data/aryeh/control_test.oib: [testng] [2024-12-17 03:13:57,201] [pool-1-thread-10] Initializing /data/molly/11OCT11.OIF: [testng] [2024-12-17 03:16:09,336] [pool-1-thread-2] Initializing /data/yoshihito/XY.oib: [testng] [2024-12-17 03:16:22,507] [pool-1-thread-2] Initializing /data/glen/simulstack.oif: [testng] [2024-12-17 03:34:02,808] [pool-1-thread-1] Initializing /data/brian/lambda02nm.oib: [testng] [2024-12-17 03:34:20,831] [pool-1-thread-1] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-12-17 03:34:40,102] [pool-1-thread-1] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-12-17 03:46:05,648] [pool-1-thread-11] Initializing /data/johannes/step4.bmp: [testng] [2024-12-17 03:46:12,335] [pool-1-thread-11] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-12-17 03:46:28,816] [pool-1-thread-11] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-12-17 03:47:13,148] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-12-17 03:47:33,694] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-12-17 03:47:48,136] [pool-1-thread-6] Initializing /data/brian/Kaede15.oib: [testng] [2024-12-17 03:48:02,387] [pool-1-thread-6] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-12-17 03:50:35,266] [pool-1-thread-6] Initializing /data/jae/Image0001.oib: [testng] [2024-12-17 03:50:47,522] [pool-1-thread-6] Initializing /data/chris/missegragation-15.oib: [testng] [2024-12-17 03:50:57,273] [pool-1-thread-6] Initializing /data/molly/11OCT6.OIF: [testng] [2024-12-17 03:52:56,681] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] [2024-12-17 03:56:33,062] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-12-17 03:56:46,721] [pool-1-thread-8] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-12-17 03:57:03,025] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-12-17 03:57:07,121] [pool-1-thread-8] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-12-17 03:57:19,686] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-12-17 03:57:22,694] [pool-1-thread-8] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-12-17 03:57:39,612] [pool-1-thread-11] Initializing /data/pedro/plv-test.oib: [testng] [2024-12-17 03:57:52,994] [pool-1-thread-11] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-12-17 03:58:09,682] [pool-1-thread-11] Initializing /data/johannes/step4b.bmp: [testng] [2024-12-17 03:58:15,401] [pool-1-thread-11] Initializing /data/tom/RGB-1.avi: [testng] [2024-12-17 03:58:24,412] [pool-1-thread-11] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-12-17 04:01:31,705] [pool-1-thread-1] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-12-17 04:01:45,091] [pool-1-thread-1] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-12-17 04:01:58,942] [pool-1-thread-1] Initializing /data/david/Image0016.oib: [testng] [2024-12-17 04:02:12,312] [pool-1-thread-1] Initializing /data/tom/zseries-test.oib: [testng] [2024-12-17 04:02:28,190] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-12-17 04:04:44,020] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-12-17 04:04:58,603] [pool-1-thread-2] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-12-17 04:05:04,105] [pool-1-thread-12] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-12-17 04:05:19,997] [pool-1-thread-2] Initializing /data/glen/notsaturated.oif: [testng] [2024-12-17 04:05:28,698] [pool-1-thread-8] Initializing /data/yasunori/series_1.oib: [testng] 04:05:39,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:05:39,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:39,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-17_04-05-39.log] [testng] 04:05:39,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ac7da82 - End of configuration. [testng] [2024-12-17 04:05:40,519] [pool-1-thread-8] Initializing /data/yoshihito/XY.oif: [testng] [2024-12-17 04:06:03,763] [pool-1-thread-7] Initializing /data/molly/11OCT8.OIF: [testng] [2024-12-17 04:08:15,914] [pool-1-thread-12] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-12-17 04:08:30,705] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oif: [testng] [2024-12-17 04:08:42,366] [pool-1-thread-8] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-12-17 04:09:01,577] [pool-1-thread-8] Initializing /data/sten/01.oib: [testng] [2024-12-17 04:09:19,372] [pool-1-thread-8] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-12-17 04:11:20,556] [pool-1-thread-12] Initializing /data/simon/never_worked.oib: [testng] [2024-12-17 04:11:36,731] [pool-1-thread-12] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-12-17 04:11:43,697] [pool-1-thread-3] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-12-17 04:11:57,570] [pool-1-thread-12] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-12-17 04:19:17,589] [pool-1-thread-3] Initializing /data/molly/11OCT9.OIF: [testng] 04:21:00,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:21:00,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:21:00,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-17_04-21-00.log] [testng] 04:21:00,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f44d383 - End of configuration. [testng] [2024-12-17 04:21:54,639] [pool-1-thread-5] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-12-17 04:21:57,906] [pool-1-thread-5] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-12-17 04:22:52,207] [pool-1-thread-5] Initializing /data/allan/62909#1.oib: [testng] [2024-12-17 04:22:59,324] [pool-1-thread-8] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-12-17 04:23:13,664] [pool-1-thread-5] Initializing /data/glen/Image0002.oif: [testng] [2024-12-17 04:24:55,441] [pool-1-thread-10] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-12-17 04:25:04,462] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-12-17 04:25:15,284] [pool-1-thread-10] Initializing /data/glen/seqlinestack.oif: [testng] 04:25:20,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:25:20,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:20,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-17_04-25-20.log] [testng] 04:25:20,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10601b15 - End of configuration. [testng] [2024-12-17 04:30:58,300] [pool-1-thread-2] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-12-17 04:31:08,024] [pool-1-thread-2] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-12-17 04:32:41,992] [pool-1-thread-2] Initializing /data/glen/simulstack.oib: [testng] [2024-12-17 04:32:50,801] [pool-1-thread-2] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-12-17 04:32:59,367] [pool-1-thread-2] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-12-17 04:33:07,667] [pool-1-thread-2] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-12-17 04:33:17,332] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-12-17 04:33:25,495] [pool-1-thread-2] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-12-17 04:33:43,934] [pool-1-thread-4] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-12-17 04:33:52,836] [pool-1-thread-2] Initializing /data/karl/Image0009.oib: [testng] [2024-12-17 04:34:06,057] [pool-1-thread-2] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-12-17 04:34:20,126] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-12-17 04:34:37,953] [pool-1-thread-2] Initializing /data/glen/111407.oif: [testng] 05:40:59,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:40:59,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:40:59,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-17_05-40-59.log] [testng] 05:40:59,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e502895 - End of configuration. [testng] 06:34:31,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:34:31,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:34:31,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-17_06-34-31.log] [testng] 06:34:31,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c73395d - End of configuration. [testng] 06:57:46,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:57:46,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:57:46,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-17_06-57-46.log] [testng] 06:57:46,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74474369 - End of configuration. [testng] 07:58:05,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:58:05,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:58:05,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-17_07-58-05.log] [testng] 07:58:05,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39e93507 - End of configuration. [testng] 08:12:31,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:12:31,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:12:31,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-17_08-12-31.log] [testng] 08:12:31,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6801b4a4 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 415 minutes 2 seconds Finished: SUCCESS