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Started by upstream project "BIOFORMATS-test-repo" build number 293 originally caused by: Started by upstream project "Trigger" build number 312 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins12793773898593771954.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46331_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 04:52:59,167 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:52:59,169 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 04:52:59,169 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:52:59,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:52:59,171 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:52:59,171 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:52:59,171 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:52:59,171 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:52:59,172 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:52:59,172 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:52:59,173 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:52:59,173 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:52:59,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:52:59,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:52:59,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:52:59,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:52:59,366 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:52:59,366 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:52:59,367 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:52:59,367 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:52:59,367 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 04:52:59,368 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 04:52:59,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-17 04:52:59,380] [main] java.version = 11.0.16 [testng] 04:52:59,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:52:59,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:52:59,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-17_04-52-59.log] [testng] 04:52:59,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-17 04:52:59,433] [main] testng.directory = /data [testng] [2024-12-17 04:52:59,433] [main] testng.configDirectory = /config [testng] [2024-12-17 04:52:59,442] [main] testng.multiplier = 1.0 [testng] [2024-12-17 04:52:59,443] [main] testng.in-memory = false [testng] [2024-12-17 04:52:59,443] [main] testng.allow-missing = false [testng] [2024-12-17 04:52:59,443] [main] user.language = en [testng] [2024-12-17 04:52:59,444] [main] user.country = ${user.country} [testng] [2024-12-17 04:52:59,444] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-17 05:01:59,601] [main] ---------------------------------------- [testng] [2024-12-17 05:01:59,602] [main] Total files: 268 [testng] [2024-12-17 05:01:59,602] [main] Scan time: 540.157 s (2015 ms/file) [testng] [2024-12-17 05:01:59,602] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-17 05:13:41,715] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] 05:13:41,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:13:41,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:13:41,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-17_05-13-41.log] [testng] 05:13:41,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b76141f - End of configuration. [testng] [2024-12-17 05:13:47,236] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] 05:13:47,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:13:47,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:13:47,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-17_05-13-47.log] [testng] 05:13:47,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@260dbf98 - End of configuration. [testng] [2024-12-17 05:13:51,831] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] 05:13:51,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:13:51,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:13:51,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-17_05-13-51.log] [testng] 05:13:51,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f600f56 - End of configuration. [testng] [2024-12-17 05:13:56,634] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] 05:13:56,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:13:56,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:13:56,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-17_05-13-56.log] [testng] 05:13:56,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20c6bda1 - End of configuration. [testng] [2024-12-17 05:13:58,052] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] 05:13:58,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:13:58,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:13:58,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-17_05-13-58.log] [testng] 05:13:58,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e35d55 - End of configuration. [testng] [2024-12-17 05:13:59,389] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 05:13:59,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:13:59,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:13:59,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-17_05-13-59.log] [testng] 05:13:59,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@940f2a4 - End of configuration. [testng] [2024-12-17 05:14:03,985] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] 05:14:03,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:14:03,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:14:03,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-17_05-14-03.log] [testng] 05:14:03,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c74be94 - End of configuration. [testng] [2024-12-17 05:14:05,704] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] 05:14:05,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:14:05,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:14:05,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-17_05-14-05.log] [testng] 05:14:05,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49fb0314 - End of configuration. [testng] [2024-12-17 05:14:07,547] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] 05:14:07,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:14:07,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:14:07,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-17_05-14-07.log] [testng] 05:14:07,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14eaf69 - End of configuration. [testng] [2024-12-17 05:14:08,833] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] 05:14:08,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:14:08,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:14:08,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-17_05-14-08.log] [testng] 05:14:08,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14d88f36 - End of configuration. [testng] [2024-12-17 05:14:13,423] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] 05:14:13,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:14:13,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:14:13,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-17_05-14-13.log] [testng] 05:14:13,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad0e8ef - End of configuration. [testng] [2024-12-17 05:14:14,814] [pool-1-thread-2] Initializing /data/steve/TIFF/Hough test TIFF: [testng] 05:14:14,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:14:14,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:14:14,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-17_05-14-14.log] [testng] 05:14:14,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63f6170 - End of configuration. [testng] [2024-12-17 05:14:31,076] [pool-1-thread-5] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-12-17 05:14:32,603] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-12-17 05:14:37,743] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-12-17 05:14:39,284] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-12-17 05:14:40,979] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-12-17 05:14:42,506] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-12-17 05:14:56,637] [pool-1-thread-5] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-12-17 05:14:59,265] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-12-17 05:15:00,437] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-12-17 05:15:02,445] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-12-17 05:15:04,926] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-12-17 05:15:06,049] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-12-17 05:15:08,652] [pool-1-thread-1] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-12-17 05:15:10,954] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-12-17 05:15:16,267] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-12-17 05:15:18,021] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-12-17 05:15:24,527] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-12-17 05:15:27,761] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-12-17 05:15:30,308] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-12-17 05:15:35,352] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-12-17 05:15:36,080] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-12-17 05:15:37,587] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-12-17 05:15:39,922] [pool-1-thread-12] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-12-17 05:15:41,628] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-12-17 05:15:42,022] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-12-17 05:15:52,816] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-12-17 05:15:55,569] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-12-17 05:15:59,480] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-12-17 05:16:01,820] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-12-17 05:16:07,574] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-12-17 05:16:09,494] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-12-17 05:16:11,186] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-12-17 05:16:16,530] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-12-17 05:16:17,911] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-12-17 05:16:20,071] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-12-17 05:16:21,626] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-12-17 05:16:27,199] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-12-17 05:16:28,203] [pool-1-thread-6] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-12-17 05:16:35,148] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-12-17 05:16:36,461] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-12-17 05:16:38,362] [pool-1-thread-7] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-12-17 05:16:40,200] [pool-1-thread-10] Initializing /data/steve/FITS/M13.fits: [testng] [2024-12-17 05:16:41,114] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-12-17 05:16:42,759] [pool-1-thread-5] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-12-17 05:16:45,154] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-12-17 05:16:49,981] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-12-17 05:16:51,339] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-12-17 05:16:52,798] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-12-17 05:16:55,100] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-12-17 05:16:56,685] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-12-17 05:16:58,927] [pool-1-thread-9] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-12-17 05:17:09,520] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-12-17 05:17:12,143] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-12-17 05:17:14,004] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-12-17 05:17:15,649] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-12-17 05:17:18,051] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-12-17 05:17:20,150] [pool-1-thread-4] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-12-17 05:17:22,911] [pool-1-thread-11] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-12-17 05:17:27,133] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-12-17 05:17:30,144] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-12-17 05:17:35,570] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-12-17 05:17:38,508] [pool-1-thread-12] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-12-17 05:17:44,845] [pool-1-thread-5] Initializing /data/steve/FITS/M104.fits: [testng] [2024-12-17 05:17:45,382] [pool-1-thread-7] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-12-17 05:17:47,815] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-12-17 05:17:56,968] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-12-17 05:17:58,079] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-12-17 05:18:01,083] [pool-1-thread-9] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-12-17 05:18:11,590] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-12-17 05:18:15,799] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-12-17 05:18:19,421] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-12-17 05:18:23,135] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-12-17 05:18:27,304] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-12-17 05:18:31,315] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-12-17 05:18:33,530] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-12-17 05:18:35,605] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-12-17 05:18:42,093] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-12-17 05:18:43,887] [pool-1-thread-12] Initializing /data/steve/FITS/M51.fits: [testng] [2024-12-17 05:18:45,533] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-12-17 05:18:48,675] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-12-17 05:18:50,111] [pool-1-thread-5] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-12-17 05:18:56,481] [pool-1-thread-3] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-12-17 05:19:00,094] [pool-1-thread-8] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-12-17 05:19:09,367] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-12-17 05:19:10,288] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-12-17 05:19:16,409] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-12-17 05:19:17,959] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-12-17 05:19:24,946] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-12-17 05:19:26,410] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-12-17 05:19:28,472] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-12-17 05:19:35,528] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-12-17 05:19:38,512] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-12-17 05:19:41,088] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-12-17 05:19:48,911] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-12-17 05:19:50,604] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-12-17 05:19:52,967] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-12-17 05:19:55,306] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-12-17 05:20:01,808] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-12-17 05:20:07,918] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-12-17 05:20:14,227] [pool-1-thread-8] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-12-17 05:20:17,435] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-12-17 05:20:23,119] [pool-1-thread-7] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-12-17 05:20:30,053] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-12-17 05:20:31,653] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-12-17 05:20:42,538] [pool-1-thread-9] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-12-17 05:20:48,387] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-12-17 05:20:50,626] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-12-17 05:20:53,104] [pool-1-thread-4] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-12-17 05:20:59,351] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-12-17 05:21:10,259] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-12-17 05:21:12,948] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-12-17 05:21:19,716] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-12-17 05:21:22,760] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-12-17 05:21:25,140] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-12-17 05:21:32,168] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-12-17 05:21:34,244] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-12-17 05:21:36,099] [pool-1-thread-3] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-12-17 05:21:37,800] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-12-17 05:21:44,202] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-12-17 05:21:47,430] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-12-17 05:21:48,882] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-12-17 05:21:50,039] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-12-17 05:21:51,799] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-12-17 05:21:53,295] [pool-1-thread-5] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-12-17 05:21:59,660] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-12-17 05:22:01,413] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-12-17 05:22:06,524] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-12-17 05:22:08,350] [pool-1-thread-3] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-12-17 05:22:17,124] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-12-17 05:22:18,149] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-12-17 05:22:19,713] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-12-17 05:22:21,366] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-12-17 05:22:22,720] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-12-17 05:22:24,546] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-12-17 05:22:27,069] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-12-17 05:22:32,339] [pool-1-thread-8] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-12-17 05:22:34,536] [pool-1-thread-7] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-12-17 05:22:42,641] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-12-17 05:22:51,968] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-12-17 05:22:53,870] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-12-17 05:22:55,560] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-12-17 05:22:59,876] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-12-17 05:23:03,151] [pool-1-thread-1] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-12-17 05:23:09,983] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-12-17 05:23:13,622] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-12-17 05:23:19,839] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-12-17 05:23:22,227] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-12-17 05:23:29,566] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 31 minutes 0 seconds Finished: SUCCESS