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Started by upstream project "BIOFORMATS-test-repo" build number 293 originally caused by: Started by upstream project "Trigger" build number 312 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins10381005756286981206.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46371_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 08:38:14,862 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:38:14,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 08:38:14,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:38:14,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:38:14,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:38:14,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:38:14,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:38:14,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:38:14,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:38:14,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:38:14,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:38:14,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:38:15,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:38:15,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:38:15,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:38:15,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:38:15,151 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:38:15,152 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:38:15,152 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:38:15,152 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:38:15,152 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 08:38:15,153 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 08:38:15,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-17 08:38:15,162] [main] java.version = 11.0.16 [testng] 08:38:15,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:38:15,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:15,206 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-17_08-38-15.log] [testng] 08:38:15,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-17 08:38:15,209] [main] testng.directory = /data [testng] [2024-12-17 08:38:15,209] [main] testng.configDirectory = /config [testng] [2024-12-17 08:38:15,219] [main] testng.multiplier = 1.0 [testng] [2024-12-17 08:38:15,220] [main] testng.in-memory = false [testng] [2024-12-17 08:38:15,220] [main] testng.allow-missing = false [testng] [2024-12-17 08:38:15,220] [main] user.language = en [testng] [2024-12-17 08:38:15,220] [main] user.country = ${user.country} [testng] [2024-12-17 08:38:15,220] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-17 08:43:03,565] [main] ---------------------------------------- [testng] [2024-12-17 08:43:03,565] [main] Total files: 15735 [testng] [2024-12-17 08:43:03,565] [main] Scan time: 288.345 s (18 ms/file) [testng] [2024-12-17 08:43:03,566] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-17 08:51:42,966] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] 08:51:42,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:51:42,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:51:42,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-17_08-51-42.log] [testng] 08:51:42,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60d0fc72 - End of configuration. [testng] [2024-12-17 08:51:45,904] [pool-1-thread-12] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] 08:51:45,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:51:45,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:51:45,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-17_08-51-45.log] [testng] 08:51:45,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fbaceb8 - End of configuration. [testng] [2024-12-17 08:51:49,194] [pool-1-thread-11] Initializing /data/converted/sebastien/test.tif: [testng] 08:51:49,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:51:49,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:51:49,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-17_08-51-49.log] [testng] 08:51:49,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c5bee65 - End of configuration. [testng] [2024-12-17 08:51:53,033] [pool-1-thread-10] Initializing /data/converted/nicolas/image.tif: [testng] 08:51:53,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:51:53,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:51:53,034 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-17_08-51-53.log] [testng] 08:51:53,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@198d958e - End of configuration. [testng] [2024-12-17 08:51:56,988] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] 08:51:56,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:51:56,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:51:56,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-17_08-51-56.log] [testng] 08:51:56,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b8cdf3a - End of configuration. [testng] [2024-12-17 08:52:01,052] [pool-1-thread-8] Initializing /data/converted/lior/live+cf2b.tif: [testng] 08:52:01,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:52:01,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:01,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-17_08-52-01.log] [testng] 08:52:01,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33f42f03 - End of configuration. [testng] [2024-12-17 08:52:04,081] [pool-1-thread-7] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] 08:52:04,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:52:04,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:04,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-17_08-52-04.log] [testng] 08:52:04,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31d6873a - End of configuration. [testng] [2024-12-17 08:52:07,061] [pool-1-thread-6] Initializing /data/scott/Slide133-11.tif: [testng] 08:52:07,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:52:07,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:07,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-17_08-52-07.log] [testng] 08:52:07,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@531b272f - End of configuration. [testng] [2024-12-17 08:52:09,752] [pool-1-thread-5] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] 08:52:09,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:52:09,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:09,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-17_08-52-09.log] [testng] 08:52:09,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f7b66ba - End of configuration. [testng] [2024-12-17 08:52:12,509] [pool-1-thread-4] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] 08:52:12,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:52:12,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:12,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-17_08-52-12.log] [testng] 08:52:12,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75e1d425 - End of configuration. [testng] [2024-12-17 08:52:15,420] [pool-1-thread-3] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] 08:52:15,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:52:15,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:15,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-17_08-52-15.log] [testng] 08:52:15,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a6a98e - End of configuration. [testng] [2024-12-17 08:52:18,096] [pool-1-thread-2] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] 08:52:18,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:52:18,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:52:18,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-17_08-52-18.log] [testng] 08:52:18,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2238fbb7 - End of configuration. [testng] [2024-12-17 08:53:31,270] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-12-17 08:53:35,578] [pool-1-thread-10] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-12-17 08:53:41,023] [pool-1-thread-5] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-12-17 08:53:45,737] [pool-1-thread-6] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-12-17 08:54:12,952] [pool-1-thread-4] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-12-17 08:54:19,103] [pool-1-thread-12] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-12-17 08:54:23,534] [pool-1-thread-1] Initializing /data/converted/michel/c.tif: [testng] [2024-12-17 08:54:51,033] [pool-1-thread-8] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-12-17 08:55:06,646] [pool-1-thread-6] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-12-17 08:55:22,717] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-12-17 08:55:27,375] [pool-1-thread-12] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-12-17 08:55:55,634] [pool-1-thread-1] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-12-17 08:56:52,713] [pool-1-thread-8] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-12-17 08:57:25,904] [pool-1-thread-1] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-12-17 08:57:59,352] [pool-1-thread-8] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-12-17 08:59:15,742] [pool-1-thread-1] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-12-17 08:59:31,063] [pool-1-thread-8] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2024-12-17 09:01:52,041] [pool-1-thread-7] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-12-17 09:03:01,292] [pool-1-thread-5] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-12-17 09:03:46,698] [pool-1-thread-10] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-12-17 09:04:20,045] [pool-1-thread-5] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-12-17 09:04:28,399] [pool-1-thread-1] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-12-17 09:06:12,162] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-12-17 09:06:57,881] [pool-1-thread-7] Initializing /data/converted/michel/d.tif: [testng] [2024-12-17 09:08:16,094] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-12-17 09:09:48,914] [pool-1-thread-12] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-12-17 09:11:30,982] [pool-1-thread-12] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-12-17 09:12:32,354] [pool-1-thread-3] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-12-17 09:13:19,787] [pool-1-thread-10] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-12-17 09:13:27,984] [pool-1-thread-3] Initializing /data/scott/Slide133-01.tif: [testng] [2024-12-17 09:13:32,520] [pool-1-thread-11] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-12-17 09:14:08,232] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-12-17 09:14:20,740] [pool-1-thread-10] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-12-17 09:14:33,122] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] [2024-12-17 09:14:50,325] [pool-1-thread-11] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-12-17 09:16:02,560] [pool-1-thread-3] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-12-17 09:17:01,113] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-12-17 09:19:29,130] [pool-1-thread-10] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-12-17 09:19:48,626] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-12-17 09:20:45,855] [pool-1-thread-10] Initializing /data/converted/converted/2chz.tif: [testng] [2024-12-17 09:20:49,861] [pool-1-thread-4] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-12-17 09:21:10,413] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-12-17 09:25:59,799] [pool-1-thread-1] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-12-17 09:28:21,650] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-12-17 09:33:30,987] [pool-1-thread-7] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-12-17 09:34:12,383] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-12-17 09:34:21,797] [pool-1-thread-12] Initializing /data/converted/dietmar/138.tif: [testng] [2024-12-17 09:35:49,547] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-12-17 09:40:00,134] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-12-17 09:40:36,502] [pool-1-thread-11] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-12-17 09:43:55,109] [pool-1-thread-6] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-12-17 09:44:18,932] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-12-17 09:45:31,713] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-12-17 09:46:56,531] [pool-1-thread-7] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-12-17 09:49:52,310] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-12-17 09:52:55,729] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-12-17 09:54:59,155] [pool-1-thread-10] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-12-17 09:56:28,139] [pool-1-thread-10] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-12-17 09:56:51,683] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-12-17 09:57:25,606] [pool-1-thread-10] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-12-17 09:57:34,304] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-12-17 09:57:51,859] [pool-1-thread-2] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-12-17 09:58:09,010] [pool-1-thread-8] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-12-17 09:58:26,121] [pool-1-thread-10] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-12-17 09:58:58,903] [pool-1-thread-5] Initializing /data/converted/michel/e.tif: [testng] [2024-12-17 09:59:10,414] [pool-1-thread-8] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-12-17 10:00:08,541] [pool-1-thread-8] Initializing /data/othmar/mozaic.tif: [testng] [2024-12-17 10:00:12,730] [pool-1-thread-9] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-12-17 10:00:33,459] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-12-17 10:01:04,542] [pool-1-thread-5] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-12-17 10:01:57,935] [pool-1-thread-9] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-12-17 10:02:20,731] [pool-1-thread-6] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-12-17 10:02:53,498] [pool-1-thread-11] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-12-17 10:06:57,523] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-12-17 10:07:27,454] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-12-17 10:08:36,399] [pool-1-thread-8] Initializing /data/converted/michel/a.tif: [testng] [2024-12-17 10:09:33,068] [pool-1-thread-8] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-12-17 10:09:36,661] [pool-1-thread-12] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-12-17 10:10:36,835] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-12-17 10:14:17,751] [pool-1-thread-12] Initializing /data/converted/converted/damian.tif: [testng] [2024-12-17 10:14:35,746] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-12-17 10:15:20,393] [pool-1-thread-12] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-12-17 10:16:22,091] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-12-17 10:19:11,161] [pool-1-thread-7] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-12-17 10:20:47,062] [pool-1-thread-6] Initializing /data/scott/Slide133-08.tif: [testng] [2024-12-17 10:21:46,543] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-12-17 10:23:30,076] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-12-17 10:24:10,618] [pool-1-thread-1] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-12-17 10:25:29,571] [pool-1-thread-5] Initializing /data/converted/dietmar/137.tif: [testng] [2024-12-17 10:27:52,526] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-12-17 10:30:29,222] [pool-1-thread-4] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-12-17 10:34:26,601] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-12-17 10:34:38,369] [pool-1-thread-12] Initializing /data/scott/Slide133-04.tif: [testng] [2024-12-17 10:35:32,364] [pool-1-thread-12] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-12-17 10:36:58,445] [pool-1-thread-6] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-12-17 10:37:34,453] [pool-1-thread-1] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-12-17 10:38:10,316] [pool-1-thread-9] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-12-17 10:38:29,493] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-12-17 10:38:36,104] [pool-1-thread-9] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-12-17 10:39:30,163] [pool-1-thread-12] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-12-17 10:39:37,097] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-12-17 10:40:04,985] [pool-1-thread-8] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-12-17 10:40:19,057] [pool-1-thread-12] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-12-17 10:40:54,525] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-12-17 10:41:02,254] [pool-1-thread-9] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-12-17 10:41:08,371] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-12-17 10:50:03,502] [pool-1-thread-7] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-12-17 10:51:34,538] [pool-1-thread-10] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-12-17 10:52:02,985] [pool-1-thread-7] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-12-17 10:52:19,741] [pool-1-thread-10] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-12-17 10:52:49,415] [pool-1-thread-7] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-12-17 10:57:07,919] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-12-17 10:57:40,649] [pool-1-thread-5] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] 11:04:52,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:04:52,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:04:52,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-17_11-04-52.log] [testng] 11:04:52,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d5c466b - End of configuration. [testng] 11:06:16,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:06:16,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:06:16,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-17_11-06-16.log] [testng] 11:06:16,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65cc1572 - End of configuration. [testng] 11:59:01,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:59:01,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:59:01,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-17_11-59-01.log] [testng] 11:59:01,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2575e016 - End of configuration. [testng] 12:09:39,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:09:39,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:09:39,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-17_12-09-39.log] [testng] 12:09:39,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14dd20de - End of configuration. [testng] 12:14:47,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:14:47,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:14:47,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-17_12-14-47.log] [testng] 12:14:47,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bcf8bd7 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 216 minutes 44 seconds Finished: SUCCESS