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Started by upstream project "BIOFORMATS-test-repo" build number 294 originally caused by: Started by upstream project "Trigger" build number 313 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins29850731479452322.sh + '[' specs = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46434_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:44:55,395 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:44:55,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:44:55,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:44:55,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:44:55,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:44:55,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:44:55,398 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:44:55,398 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:44:55,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:44:55,399 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:44:55,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:44:55,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:44:55,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:44:55,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:44:55,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:44:55,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:44:55,596 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:44:55,596 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:44:55,596 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:44:55,597 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:44:55,597 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:44:55,597 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:44:55,598 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-18 00:44:55,606] [main] java.version = 17.0.2 [testng] 00:44:55,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:44:55,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:55,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_00-44-55.log] [testng] 00:44:55,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-18 00:44:55,652] [main] testng.directory = /data [testng] [2024-12-18 00:44:55,652] [main] testng.configDirectory = /config [testng] [2024-12-18 00:44:55,660] [main] testng.multiplier = 1.0 [testng] [2024-12-18 00:44:55,661] [main] testng.in-memory = false [testng] [2024-12-18 00:44:55,661] [main] testng.allow-missing = false [testng] [2024-12-18 00:44:55,661] [main] user.language = en [testng] [2024-12-18 00:44:55,661] [main] user.country = ${user.country} [testng] [2024-12-18 00:44:55,661] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-18 00:59:45,374] [main] ---------------------------------------- [testng] [2024-12-18 00:59:45,374] [main] Total files: 226 [testng] [2024-12-18 00:59:45,374] [main] Scan time: 889.712 s (3936 ms/file) [testng] [2024-12-18 00:59:45,374] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-18 01:11:05,095] [pool-1-thread-1] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 01:11:05,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:11:05,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:05,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_01-11-05.log] [testng] 01:11:05,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12bc5dd4 - End of configuration. [testng] [2024-12-18 01:11:06,551] [pool-1-thread-12] Initializing /data/fluoview/SpineAnimation.tif: [testng] 01:11:06,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:11:06,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:06,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_01-11-06.log] [testng] 01:11:06,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cc825de - End of configuration. [testng] [2024-12-18 01:11:08,949] [pool-1-thread-11] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] 01:11:08,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:11:08,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:08,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-18_01-11-08.log] [testng] 01:11:08,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a15d4db - End of configuration. [testng] [2024-12-18 01:11:10,611] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:11:10,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:11:10,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:10,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_01-11-10.log] [testng] 01:11:10,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49ec86a - End of configuration. [testng] [2024-12-18 01:11:11,729] [pool-1-thread-9] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 01:11:11,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:11:11,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:11,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_01-11-11.log] [testng] 01:11:11,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b37e9a7 - End of configuration. [testng] [2024-12-18 01:11:12,581] [pool-1-thread-8] Initializing /data/iplab/3t3 Cell.IPL: [testng] 01:11:12,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:11:12,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:12,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_01-11-12.log] [testng] 01:11:12,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d3e9773 - End of configuration. [testng] [2024-12-18 01:11:13,076] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL: [testng] 01:11:13,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:11:13,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:13,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_01-11-13.log] [testng] 01:11:13,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20945a05 - End of configuration. [testng] [2024-12-18 01:11:13,231] [pool-1-thread-6] Initializing /data/iplab/Blend_Dapi.IPL: [testng] 01:11:13,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:11:13,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:13,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-18_01-11-13.log] [testng] 01:11:13,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b8fb0dc - End of configuration. [testng] [2024-12-18 01:11:13,390] [pool-1-thread-5] Initializing /data/iplab/16Bit XRay.IPL: [testng] 01:11:13,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:11:13,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:13,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-18_01-11-13.log] [testng] 01:11:13,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bf7af0 - End of configuration. [testng] [2024-12-18 01:11:13,534] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] 01:11:13,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:11:13,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:13,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-18_01-11-13.log] [testng] 01:11:13,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ef848f3 - End of configuration. [testng] [2024-12-18 01:11:13,769] [pool-1-thread-3] Initializing /data/fluoview/Sample_XT.tif: [testng] 01:11:13,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:11:13,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:13,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-18_01-11-13.log] [testng] 01:11:13,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a45d4bb - End of configuration. [testng] [2024-12-18 01:11:14,554] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 01:11:14,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:11:14,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:14,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_01-11-14.log] [testng] 01:11:14,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aadc944 - End of configuration. [testng] [2024-12-18 01:11:18,463] [pool-1-thread-7] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2024-12-18 01:11:18,647] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-12-18 01:11:18,854] [pool-1-thread-8] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-12-18 01:11:18,968] [pool-1-thread-6] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] [2024-12-18 01:11:19,752] [pool-1-thread-9] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-12-18 01:11:19,880] [pool-1-thread-4] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2024-12-18 01:11:24,027] [pool-1-thread-8] Initializing /data/iplab/Blend_Fitc.IPL: [testng] [2024-12-18 01:11:24,340] [pool-1-thread-9] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-12-18 01:11:24,545] [pool-1-thread-7] Initializing /data/iplab/Actin.IPL: [testng] [2024-12-18 01:11:24,746] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] [2024-12-18 01:11:27,015] [pool-1-thread-8] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2024-12-18 01:11:27,455] [pool-1-thread-3] Initializing /data/iplab/Color Image.IPL: [testng] [2024-12-18 01:11:27,600] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2024-12-18 01:11:29,502] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-12-18 01:11:30,925] [pool-1-thread-12] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-12-18 01:11:33,357] [pool-1-thread-7] Initializing /data/fluoview/SpineAnimation.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 26 minutes 56 seconds Finished: SUCCESS