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Started by upstream project "BIOFORMATS-test-repo" build number 294 originally caused by: Started by upstream project "Trigger" build number 313 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins10667260904059060480.sh + '[' targa = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46445_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:08:41,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:08:41,360 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:08:41,360 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:08:41,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:08:41,361 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:08:41,362 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:08:41,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:08:41,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:08:41,363 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:08:41,363 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:08:41,364 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:08:41,364 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:08:41,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:08:41,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:08:41,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:08:41,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:08:41,577 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:08:41,577 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:08:41,577 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:08:41,578 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:08:41,578 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:08:41,579 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:08:41,579 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 216 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-18 01:08:41,587] [main] java.version = 17.0.2 [testng] 01:08:41,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:08:41,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:41,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_01-08-41.log] [testng] 01:08:41,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-18 01:08:41,634] [main] testng.directory = /data [testng] [2024-12-18 01:08:41,634] [main] testng.configDirectory = /config [testng] [2024-12-18 01:08:41,643] [main] testng.multiplier = 1.0 [testng] [2024-12-18 01:08:41,644] [main] testng.in-memory = false [testng] [2024-12-18 01:08:41,644] [main] testng.allow-missing = false [testng] [2024-12-18 01:08:41,644] [main] user.language = en [testng] [2024-12-18 01:08:41,644] [main] user.country = ${user.country} [testng] [2024-12-18 01:08:41,644] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-18 01:08:43,319] [main] ---------------------------------------- [testng] [2024-12-18 01:08:43,319] [main] Total files: 21 [testng] [2024-12-18 01:08:43,319] [main] Scan time: 1.674 s (79 ms/file) [testng] [2024-12-18 01:08:43,319] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-18 01:09:05,590] [pool-1-thread-1] Initializing /data/samples/FLAG_B24.TGA: [testng] 01:09:05,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:09:05,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:05,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_01-09-05.log] [testng] 01:09:05,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b96b293 - End of configuration. [testng] [2024-12-18 01:09:06,361] [pool-1-thread-12] Initializing /data/samples/CBW8.TGA: [testng] 01:09:06,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:09:06,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:06,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_01-09-06.log] [testng] 01:09:06,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@586c13ca - End of configuration. [testng] [2024-12-18 01:09:07,038] [pool-1-thread-11] Initializing /data/samples/XING_B16.TGA: [testng] 01:09:07,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:09:07,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:07,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-18_01-09-07.log] [testng] 01:09:07,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27ebb803 - End of configuration. [testng] [2024-12-18 01:09:07,470] [pool-1-thread-10] Initializing /data/samples/UBW8.TGA: [testng] 01:09:07,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:09:07,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:07,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_01-09-07.log] [testng] 01:09:07,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ea15f1 - End of configuration. [testng] [2024-12-18 01:09:07,852] [pool-1-thread-9] Initializing /data/samples/XING_T24.TGA: [testng] 01:09:07,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:09:07,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:07,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_01-09-07.log] [testng] 01:09:07,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41304422 - End of configuration. [testng] [2024-12-18 01:09:08,293] [pool-1-thread-8] Initializing /data/samples/UTC32.TGA: [testng] 01:09:08,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:09:08,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:08,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_01-09-08.log] [testng] 01:09:08,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ef81a5 - End of configuration. [testng] [2024-12-18 01:09:08,672] [pool-1-thread-7] Initializing /data/samples/UCM8.TGA: [testng] 01:09:08,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:09:08,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:08,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_01-09-08.log] [testng] 01:09:08,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29688cb4 - End of configuration. [testng] [2024-12-18 01:09:09,081] [pool-1-thread-6] Initializing /data/samples/FLAG_T32.TGA: [testng] 01:09:09,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:09:09,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:09,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-18_01-09-09.log] [testng] 01:09:09,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18120a93 - End of configuration. [testng] [2024-12-18 01:09:09,804] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:09:09,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:09:09,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:09,806 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-18_01-09-09.log] [testng] 01:09:09,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e20d3c9 - End of configuration. [testng] [2024-12-18 01:09:10,908] [pool-1-thread-4] Initializing /data/samples/XING_B24.TGA: [testng] 01:09:10,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:09:10,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:10,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-18_01-09-10.log] [testng] 01:09:10,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39ae5535 - End of configuration. [testng] [2024-12-18 01:09:13,112] [pool-1-thread-3] Initializing /data/samples/XING_T16.TGA: [testng] 01:09:13,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:09:13,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:13,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-18_01-09-13.log] [testng] 01:09:13,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1505972d - End of configuration. [testng] [2024-12-18 01:09:14,152] [pool-1-thread-2] Initializing /data/samples/CTC24.TGA: [testng] 01:09:14,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:09:14,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:14,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_01-09-14.log] [testng] 01:09:14,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@307674fd - End of configuration. [testng] [2024-12-18 01:09:26,621] [pool-1-thread-10] Initializing /data/samples/FLAG_B16.TGA: [testng] [2024-12-18 01:09:28,539] [pool-1-thread-12] Initializing /data/samples/CTC16.TGA: [testng] [2024-12-18 01:09:29,758] [pool-1-thread-7] Initializing /data/samples/CCM8.TGA: [testng] [2024-12-18 01:09:30,664] [pool-1-thread-1] Initializing /data/samples/MARBLES.TGA: [testng] [2024-12-18 01:09:31,110] [pool-1-thread-5] Initializing /data/samples/UTC24.TGA: [testng] [2024-12-18 01:09:32,082] [pool-1-thread-6] Initializing /data/samples/FLAG_B32.TGA: [testng] [2024-12-18 01:09:33,361] [pool-1-thread-8] Initializing /data/samples/XING_B32.TGA: [testng] [2024-12-18 01:09:34,950] [pool-1-thread-2] Initializing /data/samples/UTC16.TGA: [testng] [2024-12-18 01:09:35,393] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 6 seconds Finished: SUCCESS